Mir-17-P2c

MirGeneDB ID

Mml-Mir-17-P2c

Family name

MIR-17 (all species)

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-18b

Paralogues

Mml-Mir-17-P1a Mml-Mir-17-P1c Mml-Mir-17-P1d Mml-Mir-17-P2a Mml-Mir-17-P4a Mml-Mir-17-P4c Mml-Mir-17-P4d

Orthologues

Aca-Mir-17-P2c Ami-Mir-17-P2c Bta-Mir-17-P2c Cfa-Mir-17-P2c Cja-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Eca-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Laf-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mmr-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Neu-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pab-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Sha-Mir-17-P2c Spt-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014356.1: 130425731-130425795 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2c)

Mir-92-P2c CM014356.1: 130425071-130425135 [-] UCSC Ensembl
Mir-92-P1c CM014356.1: 130425233-130425293 [-] UCSC Ensembl
Mir-19-P2c CM014356.1: 130425372-130425437 [-] UCSC Ensembl
Mir-17-P4c CM014356.1: 130425501-130425561 [-] UCSC Ensembl
Mir-17-P2c CM014356.1: 130425731-130425795 [-] UCSC Ensembl
Mir-17-P1c CM014356.1: 130425897-130425955 [-] UCSC Ensembl

Seed

AAGGUGC

Precursor
(pre-Mir +30nt flank)

GAGCUGCUUCUUAUAAUGUGUCUCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGCAGCUUAGAAUCUACUGCCCUAAAUGCCCCUUCUGGCACAGGCUGCCUAAUAUACAGCAUUUUAAAA

Get precursor sequence

Structure

        10          20        30          40        50        60 
GAGCUGCUUCUUAUAAUGU--  CU         --|  U    C   U     UA  GAAGCA 
                     GU  CUUGUGUUA  AGG GCAU UAG GCAGU  GU      \
                     CG  GGACACGGU  UCC CGUA AUC CGUCA  UA      G
AAAAUUUUACGACAUAUAAUC  UC         CU^  C    A   C     UC  AGAUUC 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-17-P2c_5p

mirBase accession

MIMAT0006163

Sequence

0- UAAGGUGCAUCUAGUGCAGUUAGU -24

Get sequence

Proposed targets

TargetScanVert: mml-miR-18b

Star sequence

Mml-Mir-17-P2c_3p*

mirBase accession

None

Sequence

40- UACUGCCCUAAAUGCCCCUUCUGGC -65

Get sequence