MirGeneDB 3.0
MirGeneDB ID

Mmu-Mir-208-P1

Family name MIR-208 (all species)
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-208b
Paralogues Mmu-Mir-208-P1-v1  Mmu-Mir-208-P2 
Orthologues Bta-Mir-208-P1-v1  Cfa-Mir-208-P1-v1  Cja-Mir-208-P1  Cpo-Mir-208-P1-v1  Dno-Mir-208-P1-v1  Dre-Mir-208-P1  Ebu-Mir-208-o1  Eca-Mir-208-P1-v1  Ete-Mir-208-P1a  Ete-Mir-208-P1b  Gmo-Mir-208-P1  Hsa-Mir-208-P1-v1  Laf-Mir-208-P1  Lch-Mir-208-P1  Loc-Mir-208-P1c  Loc-Mir-208-P1d  Loc-Mir-208-P1e  Mal-Mir-208-P1  Mdo-Mir-208-P1  Mml-Mir-208-P1-v1  Mmr-Mir-208-P1-v1  Mun-Mir-208-P1  Neu-Mir-208-P1  Ocu-Mir-208-P1-v1  Pab-Mir-208-P1  Rno-Mir-208-P1-v1  Sha-Mir-208-P1  Sto-Mir-208-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(mm10)		 chr14: 54975710-54975766 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-208-P1-v2)		 Mir-208-P2 chr14: 54949072-54949128 [-] UCSC Ensembl
Mir-208-P1-v1 chr14: 54975710-54975766 [-] UCSC Ensembl
Mir-208-P1-v2 chr14: 54975710-54975766 [-] UCSC Ensembl
Variant

Mmu-Mir-208-P1-v2
Seed AUAAGAC
Precursor
(pre-Mir +30nt flank)		 
AGGCACCCCCACCUCCUGCUCCUCUCAGGGAAGCUUUUUGCUCGCGUUAUGUUUCUCAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCUGAGUGCUCCCACCUGGGGUAC
Get precursor sequence
Structure
        10        20          30        40        50        
AGGCACCCCCACCUCCUG   --|       G          C   CG       UCUC 
                  CUC  CUCUCAGG AAGCUUUUUG UCG  UUAUGUU    \
                  GAG  GGGAGUCU UUUGGAAAAC AGC  AAUAUAA    A
CAUGGGGUCCACCCUCGU   UC^       G          A   AG       GCCU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Star sequence

Mmu-Mir-208-P1-v2_5p*
mirBase accessionMIMAT0017280
Sequence 
0- AAGCUUUUUGCUCGCGUUAUGUU -23
Get sequence
Proposed targets TargetScanVert: mmu-miR-208b-5p
miRDB: MIMAT0017280
Mature sequence

Mmu-Mir-208-P1-v2_3p
mirBase accessionMIMAT0004939
Sequence 
34- UAUAAGACGAACAAAAGGUUUGU -57
Get sequence
Proposed targets microrna.org: MIMAT0004939
TargetScanVert: mmu-miR-208b-3p
miRDB: MIMAT0004939
Variant

Mmu-Mir-208-P1-v1
Seed UAAGACG
Precursor
(pre-Mir +30nt flank)		 
AGGCACCCCCACCUCCUGCUCCUCUCAGGGAAGCUUUUUGCUCGCGUUAUGUUUCUCAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCUGAGUGCUCCCACCUGGGGUAC
Get precursor sequence
Structure
        10        20          30        40        50        
AGGCACCCCCACCUCCUG   --|       G          C   CG      UUCUC 
                  CUC  CUCUCAGG AAGCUUUUUG UCG  UUAUGU     \
                  GAG  GGGAGUCU UUUGGAAAAC AGC  AAUAUA     A
CAUGGGGUCCACCCUCGU   UC^       G          A   AG      AGCCU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Star sequence

Mmu-Mir-208-P1-v1_5p*
mirBase accessionMIMAT0017280
Sequence 
0- AAGCUUUUUGCUCGCGUUAUGU -22
Get sequence
Proposed targets TargetScanVert: mmu-miR-208b-5p
miRDB: MIMAT0017280
Mature sequence

Mmu-Mir-208-P1-v1_3p
mirBase accessionMIMAT0004939
Sequence 
35- AUAAGACGAACAAAAGGUUUGU -57
Get sequence
Proposed targets microrna.org: MIMAT0004939
TargetScanVert: mmu-miR-208b-3p
miRDB: MIMAT0004939