Mir-673

MirGeneDB ID

Mmu-Mir-673

Family name

MIR-673 (all species)

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-673

Paralogues

Orthologues

Rno-Mir-673

Node of Origin (locus)

Muridae

Node of Origin (family)

Muridae

Genome context
(mm10)

chr12: 109572004-109572066 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-673)

Mir-770 chr12: 109563710-109563765 [+] UCSC Ensembl
Mir-673 chr12: 109572004-109572066 [+] UCSC Ensembl
Mir-493 chr12: 109580243-109580305 [+] UCSC Ensembl
Mir-337-as chr12: 109585813-109585873 [-] UCSC Ensembl
Mir-337 chr12: 109585818-109585871 [+] UCSC Ensembl
Mir-540 chr12: 109586085-109586143 [+] UCSC Ensembl
Mir-431 chr12: 109590459-109590522 [+] UCSC Ensembl
Mir-433 chr12: 109591729-109591802 [+] UCSC Ensembl
Mir-127 chr12: 109592854-109592909 [+] UCSC Ensembl
Mir-434 chr12: 109594527-109594586 [+] UCSC Ensembl
Mir-136-v2 chr12: 109595331-109595386 [+] UCSC Ensembl
Mir-136-v1 chr12: 109595331-109595386 [+] UCSC Ensembl
Mir-370 chr12: 109618270-109618326 [+] UCSC Ensembl

Seed

UCACAGC

Precursor
(pre-Mir +30nt flank)

GUGGGAGGUCUGGCUUUGGAGCCUGAGGGGCUCACAGCUCUGGUCCUUGGAGCUCCAGAGAAAAUGUUGCUCCGGGGCUGAGUUCUGUGCACCCCCCUUGCCCUCCACACUCCCCGGGGCUAU

Get precursor sequence

Structure

        10           20        30            40        50        60 
GUGGGAGGUCUGGCUUU---  A  CU      CU--     --|  U      U     UCCAGAG 
                    GG GC  GAGGGG    CACAG  CUC GGUCCU GGAGC       \
                    CC CG  UUCCCC    GUGUC  GAG UCGGGG CCUCG       A
UAUCGGGGCCCCUCACACCU  -  --      CCAC     UU^  -      -     UUGUAAA 
 120       110        100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-673_5p

mirBase accession

MIMAT0003739

Sequence

0- CUCACAGCUCUGGUCCUUGGAGC -23

Get sequence

Proposed targets

microrna.org: MIMAT0003739
TargetScanVert: mmu-miR-673-5p
miRDB: MIMAT0003739

Star sequence

Mmu-Mir-673_3p*

mirBase accession

MIMAT0004824

Sequence

40- UCCGGGGCUGAGUUCUGUGCACC -63

Get sequence

Proposed targets

microrna.org: MIMAT0004824
TargetScanVert: mmu-miR-673-3p
miRDB: MIMAT0004824