Mir-92-o116

MirGeneDB ID

Mom-Mir-92-o116

Family name

MIR-92 (all species)

Species

Mossy chiton (Mopalia muscosa)

MiRBase ID

Paralogues

Mom-Mir-92-o114 Mom-Mir-92-o115 Mom-Mir-92-o117

Orthologues

Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

A. granulata

Node of Origin (family)

Bilateria

Genome context
(GCA_031763545.1_ASM3176354v1_genomic_Mom)

JARFOD010081680.1: 3508-3567 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-92-o116)

Mir-92-o114 JARFOD010081680.1: 722-779 [-] Ensembl
Mir-92-o117 JARFOD010081680.1: 2925-2980 [-] Ensembl
Mir-92-o116 JARFOD010081680.1: 3508-3567 [-] Ensembl
Mir-92-o115 JARFOD010081680.1: 3825-3884 [-] Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

CAGCCUACAUUCAAAUUAUCUGUCUCCGUUAGGCUUUGACCUGUGCAAUCUUUGUUGUCUUGAAAUCAAAUUGCACUAGUCCCGGCCUGCUGGCGUCAGACAUAAACACAAAAAGUCGUA

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Structure

        10          20        30        40        50         
CAGCCUACAUUCAAAUUA--|   UCU   U      UU   CU       CUUUGUUGU 
                    UCUG   CCG UAGGCU  GAC  GUGCAAU         C
                    AGAC   GGU GUCCGG  CUG  CACGUUA         U
AUGCUGAAAAACACAAAUAC^   UGC   C      CC   AU       AACUAAAGU 
.       110       100        90        80        70        60

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as oMomans pending additional data.

3' NTU

Motifs

UGUG in loop

Tissue expression

To

Star sequence

Mom-Mir-92-o116_5p* (predicted)

mirBase accession

None

Sequence

0- AGGCUUUGACCUGUGCAAUCUU -22

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Mature sequence

Mom-Mir-92-o116_3p

mirBase accession

None

Sequence

38- AAUUGCACUAGUCCCGGCCUGC -60

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