MirGeneDB 3.0
MirGeneDB ID

Neu-Mir-1546

Family name MIR-1546 (all species)
Species Tammar Wallaby (Notamacropus eugenii)
MiRBase ID
Paralogues Neu-Mir-1546-as 
Orthologues Mdo-Mir-1546  Mdo-Mir-1546-as  Sha-Mir-1546  Sha-Mir-1546-as 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(GCA_028372415.1_mMacEug1.pri)		 CM051816.1: 16147638-16147697 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1546)		 Mir-1546-as CM051816.1: 16147637-16147695 [-] UCSC Ensembl
Mir-1546 CM051816.1: 16147638-16147697 [+] UCSC Ensembl
Seed CAGGGAU
Precursor
(pre-Mir +30nt flank)		 
AAAAUGGCUUGAAGAAUGCCUUGCCGGAAAUCAGGGAUUCUCAGGGAUGGAAGUGAGACAAAAUACCUUCCACCUCUCAGAAUCCCUAUUUUCUUUCAAGGCGCAGCUCCAACUACAAGU
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Structure
        10         20        30        40        50          
AAAAUGGCUUGAAGAAU-|     CC     UC         C    A      UGAGAC 
                  GCCUUG  GGAAA  AGGGAUUCU AGGG UGGAAG      \
                  CGGAAC  UCUUU  UCCCUAAGA UCUC ACCUUC      A
UGAACAUCAACCUCGACG^     UU     UA         C    C      CAUAAA 
.       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Ce Fi Li Mi Mi Mi Mi Mi Ov Se Se Te Te Te
Mature sequence

Neu-Mir-1546_5p
mirBase accessionNone
Sequence 
0- UCAGGGAUUCUCAGGGAUGGAAGU -24
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Star sequence

Neu-Mir-1546_3p*
mirBase accessionNone
Sequence 
37- UUCCACCUCUCAGAAUCCCUAUU -60
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