MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-653

Family name MIR-653 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-653  Cfa-Mir-653  Cja-Mir-653  Cpo-Mir-653  Dno-Mir-653  Eca-Mir-653  Hsa-Mir-653  Mml-Mir-653  Mmr-Mir-653  Mmu-Mir-653  Ocu-Mir-653  Rno-Mir-653 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054685.2: 82852827-82852883 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-653)		 Mir-489 CM054685.2: 82851746-82851805 [+] UCSC Ensembl
Mir-653 CM054685.2: 82852827-82852883 [+] UCSC Ensembl
Seed UCACUGG
Precursor
(pre-Mir +30nt flank)		 
CAGAGGUUCUGAUUUUUCAUUCCUUCAGUGUUGAAACAAUCUCUACUGAACCAGCUUCAAACAAGUUCACUGGAGUUUGUUUCAAUAUUGCAAGAAUGAUAAGAUGGAAGCUACUUU
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Structure
        10          20        30        40        50        
CAGAGGUUCUGAUUUUU--|    CUU              U     C     CAGCUU 
                   CAUUC   CAGUGUUGAAACAA CUCUA UGAAC      \
                   GUAAG   GUUAUAACUUUGUU GAGGU ACUUG      C
UUUCAUCGAAGGUAGAAUA^    AAC              U     C     AACAAA 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
- +
Br Br Li Li
Star sequence

Pab-Mir-653_5p* (predicted)
mirBase accessionNone
Sequence 
0- UUGAAACAAUCUCUACUGAACC -22
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Mature sequence

Pab-Mir-653_3p (predicted)
mirBase accessionNone
Sequence 
35- UUCACUGGAGUUUGUUUCAAUA -57
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