MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-1987

Family name MIR-1987 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Cte-Mir-1987  Efe-Mir-1987 
Node of Origin (locus) Pleistoannelida
Node of Origin (family) Pleistoannelida
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000001.1: 66332419-66332476 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-1987)		 Mir-1987 JAPTHN010000001.1: 66332419-66332476 [-] Ensembl
Mir-2705 JAPTHN010000001.1: 66337316-66337369 [-] Ensembl
Seed AUAACUG
Precursor
(pre-Mir +30nt flank)		 
ACUGUGUUCAACUAAUUGUCUAGGACAGACCAUAACUGGCACCUGGGCAUGUUGCUCUUCACUCAACUGCCAGAUGUCAUGUUGUGCACUGCUCUGCGACUUCAACCUCAAUCAGAAA
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Structure
        10         20         30         40        50         
ACUGUGUUCAACUAAUU-   -   GA   AC      -|    C    G  U    CUCU 
                  GUC UAG  CAG  CAUAAC UGGCA CUGG CA GUUG    \
                  CAG GUC  GUC  GUGUUG ACUGU GACC GU CAAC    U
AAAGACUAACUCCAACUU   C   UC   AC      U^    A    -  -    UCAC 
      110       100        90        80        70          60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-1987_5p
mirBase accessionNone
Sequence 
0- CAUAACUGGCACCUGGGCAUGUUG -24
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Co-mature sequence

Pdu-Mir-1987_3p
mirBase accessionNone
Sequence 
35- ACUGCCAGAUGUCAUGUUGUGCA -58
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