MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-1996-o1

Family name MIR-1996 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-1996-o2 
Orthologues Cte-Mir-1996  Dgr-Mir-1996  Efe-Mir-1996-P1  Snu-Mir-1996 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000001.1: 189983201-189983260 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-1996-o1)		 Mir-1996-o2 JAPTHN010000001.1: 189982418-189982474 [-] Ensembl
Mir-1996-o1 JAPTHN010000001.1: 189983201-189983260 [-] Ensembl
Seed UCAAGUG
Precursor
(pre-Mir +30nt flank)		 
UAGGCAGAUGCGUUUUGGUAUGGCGCGGGAAUCAAGUGAGGUCAGAUCUUGGGUGACAUGGGGCGCCAGGGUCAUGGUCUCAAUUGACCCCCGAGCUUAUACGUUCCACCAUUCAACCAC
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Structure
        10         20         30        40         50         
UAGGCAGAUGCGUUUUG-    -   G    AA    G    GU  -|       GUGACA 
                  GUAU GGC CGGG  UCAA UGAG  CA GAUCUUGG      \
                  CAUA UCG GCCC  AGUU ACUC  GU CUGGGACC      U
CACCAACUUACCACCUUG    U   A    CC    A    UG  A^       GCGGGG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-1996-o1_5p
mirBase accessionNone
Sequence 
0- AUCAAGUGAGGUCAGAUCUUGG -22
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Star sequence

Pdu-Mir-1996-o1_3p*
mirBase accessionNone
Sequence 
37- AGGGUCAUGGUCUCAAUUGACCC -60
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