MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-2000

Family name MIR-2000 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Cte-Mir-2000  Snu-Mir-2000 
Node of Origin (locus) Sipuncula + Pleistoannelida
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000002.1: 43826993-43827050 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2000-v1)		 Mir-1998 JAPTHN010000002.1: 43820343-43820398 [+] Ensembl
Mir-2000-v2 JAPTHN010000002.1: 43826990-43827053 [+] Ensembl
Mir-2000-v1 JAPTHN010000002.1: 43826993-43827050 [+] Ensembl
Variant

Pdu-Mir-2000-v1
Seed AAGUCUU
Precursor
(pre-Mir +30nt flank)		 
ACCAUCUACUAAUAAAUCCGUGUUUCUUGACUAAAAGUAUUGAAGGCUUUAAGUCAAAUCUCUGUUAAAGUCUUCACUACUUUUAGUUUGGAAACGCACCCUUAACGUCACGGCGCGA
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Structure
        10          20        30        40        50        
ACCAUCUACUAAUAAAUCC--|       U           U           AGUCAA 
                     GUGUUUCU GACUAAAAGUA UGAAGGCUUUA      A
                     CGCAAAGG UUGAUUUUCAU ACUUCUGAAAU      U
AGCGCGGCACUGCAAUUCCCA^       U           C           UGUCUC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-2000-v1_5p*
mirBase accessionNone
Sequence 
0- CUAAAAGUAUUGAAGGCUUUA -21
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Mature sequence

Pdu-Mir-2000-v1_3p
mirBase accessionNone
Sequence 
36- AAAGUCUUCACUACUUUUAGUU -58
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Variant

Pdu-Mir-2000-v2
Seed GACUAAA
Precursor
(pre-Mir +30nt flank)		 
ACUACCAUCUACUAAUAAAUCCGUGUUUCUUGACUAAAAGUAUUGAAGGCUUUAAGUCAAAUCUCUGUUAAAGUCUUCACUACUUUUAGUUUGGAAACGCACCCUUAACGUCACGGCGCGAGAG
Get precursor sequence
Structure
        10        20          30        40        50        60 
ACUACCAUCUACUAAUAAAUCC--|       U           U         UAAGUCAA 
                        GUGUUUCU GACUAAAAGUA UGAAGGCUU        A
                        CGCAAAGG UUGAUUUUCAU ACUUCUGAA        U
GAGAGCGCGGCACUGCAAUUCCCA^       U           C         AUUGUCUC 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-2000-v2_5p
mirBase accessionNone
Sequence 
0- UGACUAAAAGUAUUGAAGGCUU -22
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Star sequence

Pdu-Mir-2000-v2_3p*
mirBase accessionNone
Sequence 
42- GUCUUCACUACUUUUAGUUUGG -64
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