Mir-193-P1d

MirGeneDB ID

Pfl-Mir-193-P1d

Family name

MIR-193 (all species)

Species

Ptychodera (Ptychodera flava)

MiRBase ID

Paralogues

Pfl-Mir-193-P1c Pfl-Mir-193-P2

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Bge-Mir-193-P1 Cbr-Mir-193-P1-v1 Cel-Mir-193-P1-v1 Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dmo-Mir-193-P1-v1 Dpu-Mir-193-P1 Dsi-Mir-193-P1-v1 Dya-Mir-193-P1-v1 Eba-Mir-193-P1 Esc-Mir-193-P1 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Isc-Mir-193-P1 Lgi-Mir-193-P1 Lhy-Mir-193-P1 Mgi-Mir-193-P1 Mom-Mir-193-P1 Npo-Mir-193-P1 Obi-Mir-193-P1 Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pau-Mir-193-P1 Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rph-Mir-193-P1 Sko-Mir-193-P1d Snu-Mir-193-P1 Tca-Mir-193-P1 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

Enteropneusta

Node of Origin (family)

Bilateria

Genome context
(Pfl)

LD349275.1: 115517-115576 [+]

Clustered miRNAs
(< 50kb from Mir-193-P1d)

Mir-193-P1c LD349275.1: 115030-115089 [+]
Mir-193-P1d LD349275.1: 115517-115576 [+]
Mir-193-P2 LD349275.1: 117222-117282 [+]

Seed

ACUGGCC

Precursor
(pre-Mir +30nt flank)

CUUUGGGGUUGCUCACUGCUUGCGUGAUUUUGGGGUCUCACCGGCCACUAUAUGUUGCUGUGCUCUCAUACUGGCCAGCGAAAUCCCAAAGUCACACAAGCAUUAUCGUCUGCUGACAGA

Get precursor sequence

Structure

        10          20        30        40        50        60
CUUUGGGGUUGCUCACU--|    C             C  ACC     CUA    UUGCU 
                   GCUUG GUGAUUUUGGGGU UC   GGCCA   UAUG     G
                   CGAAC CACUGAAACCCUA AG   CCGGU   AUAC     U
AGACAGUCGUCUGCUAUUA^    A             A  CGA     C--    UCUCG 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Pfl-Mir-193-P1d_5p* (predicted)

mirBase accession

None

Sequence

0- UGGGGUCUCACCGGCCACUAUAUG -24

Get sequence

Mature sequence

Pfl-Mir-193-P1d_3p

mirBase accession

None

Sequence

38- UACUGGCCAGCGAAAUCCCAAA -60

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