MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-130-P1o1

Family name MIR-130 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-130a
Paralogues Pma-Mir-130-P1o2  Pma-Mir-130-P1o3  Pma-Mir-130-P2o1  Pma-Mir-130-P2o2  Pma-Mir-130-P4o1  Pma-Mir-130-P4o3 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046073.1: 9804247-9804309 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1o1)		 Mir-130-P1o1 NC_046073.1: 9804247-9804309 [+] UCSC Ensembl
Mir-130-P2o1 NC_046073.1: 9811592-9811655 [+] UCSC Ensembl
Mir-130-P4o1 NC_046073.1: 9819109-9819168 [+] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
CAAAAGUGGCUGCAGCUUCUGUGGGCCAAAGCCCUUUUUGUGUUGUACUACUGUCCGCUAUGGUGCUGAGCAGUGCAAUAUUAAAAAGGGCAUUGGCUGGCAGAUCAACGUCGCCAUCGACAU
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Structure
        10          20        30         40        50        60
CAAAAGUGGCUGCAGCU--     G      A         -|         A  GUCCGCU 
                   UCUGU GGCCAA GCCCUUUUU GUGUUGUACU CU       A
                   AGACG UCGGUU CGGGAAAAA UAUAACGUGA GA       U
UACAGCUACCGCUGCAACU     G      A         U^         C  GUCGUGG 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-130-P1o1_5p*
mirBase accessionMIMAT0019454
Sequence 
0- GCCCUUUUUGUGUUGUACUACU -22
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Mature sequence

Pma-Mir-130-P1o1_3p
mirBase accessionMIMAT0019455
Sequence 
40- CAGUGCAAUAUUAAAAAGGGCAU -63
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