MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-130-P4o1

Family name MIR-130 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-130d
Paralogues Pma-Mir-130-P1o1  Pma-Mir-130-P1o2  Pma-Mir-130-P1o3  Pma-Mir-130-P2o1  Pma-Mir-130-P2o2  Pma-Mir-130-P4o3 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046073.1: 9819109-9819168 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P4o1)		 Mir-130-P1o1 NC_046073.1: 9804247-9804309 [+] UCSC Ensembl
Mir-130-P2o1 NC_046073.1: 9811592-9811655 [+] UCSC Ensembl
Mir-130-P4o1 NC_046073.1: 9819109-9819168 [+] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
UCCAACGUCGAGCGCGACGGACGACCCGAUGCCCUUUCAACGUCGCACCGCUGUGAGCAGAGCGAGCAGUGCAAUGUUGAAAAAGGGCAUCGGUUCGGUUCGGCAGCAUCGUCGACGCGU
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Structure
        10         20         30          40        50        
UCCAACGUCGAGCGCGA-    -   C          --|       C    C   GUGAG 
                  CGGA CGA CCGAUGCCCU  UUCAACGU GCAC GCU     C
                  GCUU GCU GGCUACGGGA  AAGUUGUA CGUG CGA     A
UGCGCAGCUGCUACGACG    G   U          AA^       A    A   GCGAG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-130-P4o1_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCCCUUUCAACGUCGCACCGCU -22
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Mature sequence

Pma-Mir-130-P4o1_3p
mirBase accessionMIMAT0019452
Sequence 
36- CAGUGCAAUGUUGAAAAAGGGCAU -60
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