Mir-92-P1h

MirGeneDB ID

Pma-Mir-92-P1h

Family name

MIR-92 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Mir-92-P1g Pma-Mir-92-P1o1 Pma-Mir-92-P2g

Orthologues

Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046132.1: 1986098-1986160 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1h)

Mir-17-P2h NC_046132.1: 1977198-1977260 [+] UCSC Ensembl
Mir-17-P3h-v1 NC_046132.1: 1979765-1979827 [+] UCSC Ensembl
Mir-17-P3h-v2 NC_046132.1: 1979766-1979827 [+] UCSC Ensembl
Mir-19-P1h NC_046132.1: 1980048-1980109 [+] UCSC Ensembl
Mir-17-P4h NC_046132.1: 1982814-1982876 [+] UCSC Ensembl
Mir-19-P2h NC_046132.1: 1985769-1985843 [+] UCSC Ensembl
Mir-92-P1h NC_046132.1: 1986098-1986160 [+] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

CAUUUAUUUCCACAGUGGCGCAGUCCACCCAGGCUGGGGCAGGCGCGUCAAUACGCUGCCACUGGGUCCUGUAUUGCACUUGUCCCGGCCUGUAUGUGCUGCGAGAGACGCACGUGGGGGUGG

Get precursor sequence

Structure

        10          20        30        40        50        60  
CAUUUAUUUCCACAGUGG--|    UC  CC              C   UCA     CUGCCA 
                    CGCAG  CA  CAGGCUGGGGCAGG GCG   AUACG      C
                    GCGUC  GU  GUCCGGCCCUGUUC CGU   UAUGU      U
GGUGGGGGUGCACGCAGAGA^    GU  AU              A   ---     CCUGGG 
 120       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-92-P1h_5p* (predicted)

mirBase accession

None

Sequence

0- AGGCUGGGGCAGGCGCGUCAAUACG -25

Get sequence

Mature sequence

Pma-Mir-92-P1h_3p

mirBase accession

None

Sequence

41- UAUUGCACUUGUCCCGGCCUGU -63

Get sequence