MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-1549

Family name MIR-1549 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-1549
Paralogues
Orthologues Mdo-Mir-1549 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)		 GL861612.1: 2123649-2123706 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1549)		 Mir-1549 GL861612.1: 2123649-2123706 [+] UCSC Ensembl
Mir-8-P1b GL861612.1: 2158081-2158143 [+] UCSC Ensembl
Mir-8-P2b GL861612.1: 2158494-2158558 [+] UCSC Ensembl
Seed CCGGGCU
Precursor
(pre-Mir +30nt flank)		 
CGAGGCCAUCUAACGGCUUGUUGCUAGGUAGCCGGGCUCGUGGGUAGGAGCUGCGUUCACUUCUGCUUCCGCCCUGCAAGCCCGGUAGCUGGUAACAAAUUCGCUGCGUGUAGGCCUC
Get precursor sequence
Structure
        10           20        30        40         50        
CGAGGCCAUCUAACGGC---|         G  G       C  -   UA     UGCGUU 
                    UUGUUGCUAG UA CCGGGCU GU GGG  GGAGC      \
                    AACAAUGGUC AU GGCCCGA CG CCC  CUUCG      C
CUCCGGAUGUGCGUCGCUUA^         G  -       A  U   GC     UCUUCA 
      110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-1549_5p
mirBase accessionNone
Sequence 
0- GCCGGGCUCGUGGGUAGGAGC -21
Get sequence
Co-mature sequence

Sha-Mir-1549_3p
mirBase accessionMIMAT0022824
Sequence 
36- UUCCGCCCUGCAAGCCCGGUAG -58
Get sequence