Mir-7397

MirGeneDB ID

Sha-Mir-7397

Family name

MIR-7397 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Orthologues

Mdo-Mir-7397 Neu-Mir-7397

Node of Origin (locus)

Marsupialia

Node of Origin (family)

Marsupialia

Genome context
(DEVIL_add)

GL867604.1: 528131-528186 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7397)

Mir-7392-P2 GL867604.1: 507292-507347 [+] UCSC Ensembl
Mir-7392-P3 GL867604.1: 509380-509435 [+] UCSC Ensembl
Mir-7394-P1 GL867604.1: 514669-514722 [+] UCSC Ensembl
Mir-7394-P2 GL867604.1: 524445-524498 [+] UCSC Ensembl
Mir-7397 GL867604.1: 528131-528186 [+] UCSC Ensembl
Mir-7394-P3 GL867604.1: 530112-530166 [+] UCSC Ensembl

Seed

AUCUGUA

Precursor
(pre-Mir +30nt flank)

CAGCAAUCCUGCAGAAUGAGUGACCCUGGGUAUCUGUAUGUCUUGGUAACACAUGUAAAUAAAUGUGACCAAGACCUACAGAUUCUUAGUGUAUACUCAGUUGGACACCUUUACUG

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Structure

        10         20         30        40        50        
CAGCAAUCCUGCAGAAU-     -| C     U       U        AA   AUGUA 
                  GAGUG AC CUGGG AUCUGUA GUCUUGGU  CAC     A
                  CUCAU UG GAUUC UAGACAU CAGAACCA  GUG     A
GUCAUUUCCACAGGUUGA     A^ U     U       C        --   UAAAU 
    110       100        90        80        70          60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-7397_5p

mirBase accession

None

Sequence

0- UAUCUGUAUGUCUUGGUAACAC -22

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Star sequence

Sha-Mir-7397_3p*

mirBase accession

None

Sequence

35- UGACCAAGACCUACAGAUUCU -56

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