| MirGeneDB ID | Spt-Mir-1805 |
|---|---|
| Family name | MIR-1805 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-1805 Ami-Mir-1805 Cli-Mir-1805 Cpi-Mir-1805 Gga-Mir-1805 Gja-Mir-1805-P3 Gja-Mir-1805-P4 Mdo-Mir-1805 Neu-Mir-1805 Pbv-Mir-1805 Sha-Mir-1805 Tgu-Mir-1805 Xla-Mir-1805-P1 Xla-Mir-1805-P2 Xtr-Mir-1805 |
| Node of Origin (locus) | Tetrapoda |
| Node of Origin (family) | Tetrapoda |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01009431.1: 367038-367098 [-] UCSC Ensembl |
| Seed | GUAUUGG |
| Precursor (pre-Mir +30nt flank) |
GCAGUAUGGGAAAGCAUGGAAUAUUCUGGGAGUUGUAGUUUUUCAAACAGAGCUCUGCAAGUAUAUACCUGUAUUGGAACACUACAGCUCCAGGAACUUCCUAGUGACACUAACUAUGAAAGet precursor sequence |
| Structure | 10 20 30 40 50 GCAGUAUGGGAAAGCAU---| UA G U - AGCUCUGC GGAA UUCU GGAGUUGUAGU UUUCAA ACAG A CCUU AAGG CCUCGACAUCA AAGGUU UGUC A AAAGUAUCAAUCACAGUGAU^ C- A C A CAUAUAUG . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Star sequence | Spt-Mir-1805_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGUUGUAGUUUUUCAAACAGA -21
Get sequence
|
| Mature sequence | Spt-Mir-1805_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- UGUAUUGGAACACUACAGCUCC -61
Get sequence
|
