| MirGeneDB ID | Spt-Mir-194-P2 |
|---|---|
| Family name | MIR-194 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-194-P4 |
| Orthologues | Aca-Mir-194-P2 Ami-Mir-194-P2 Bta-Mir-194-P2 Cfa-Mir-194-P2 Cja-Mir-194-P2 Cli-Mir-194-P2 Cmi-Mir-194-P2 Cpi-Mir-194-P2 Eca-Mir-194-P2 Ete-Mir-194-P2 Gga-Mir-194-P2 Gja-Mir-194-P2 Hsa-Mir-194-P2 Laf-Mir-194-P2 Lch-Mir-194-P2 Mml-Mir-194-P2 Mmr-Mir-194-P2 Mmu-Mir-194-P2 Mun-Mir-194-P2 Oan-Mir-194-P2 Ocu-Mir-194-P2 Pab-Mir-194-P2 Pbv-Mir-194-P2 Rno-Mir-194-P2 Sto-Mir-194-P2 Tgu-Mir-194-P2 Xla-Mir-194-P2a Xla-Mir-194-P2b Xtr-Mir-194-P2 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01005170.1: 340064-340119 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-194-P2) |
Mir-192-P2
QEPC01005170.1: 339744-339804 [-]
UCSC
Ensembl
Mir-194-P2 QEPC01005170.1: 340064-340119 [-] UCSC Ensembl |
| Seed | GUAACAG |
| Precursor (pre-Mir +30nt flank) |
AAUCAAGAUUACCGAGACAGUGCUGUCAAGUGUAACAGCAACUCCAUGUGGACUGCGUAUACUUCCAGUGGAGAUGCUGUUACUUUUGAAAGACACCGACAGACUAUGAAGCAGCCGet precursor sequence |
| Structure | 10 20 30 40 50 AAUCAAGAUUACCGAGACA- -| G U A G CUGCG GUG CU UCAAG GUAACAGCA CUCCAU UGGA \ CAC GA AGUUU CAUUGUCGU GAGGUG ACCU U CCGACGAAGUAUCAGACAGC A^ A U A - UCAUA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Spt-Mir-194-P2_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGUAACAGCAACUCCAUGUGGAC -23
Get sequence
|
| Star sequence | Spt-Mir-194-P2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
34- CCAGUGGAGAUGCUGUUACUUU -56
Get sequence
|
