Mir-279-o3

MirGeneDB ID

Tca-Mir-279-o3

Family name

MIR-279 (all species)

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-279b

Paralogues

Tca-Mir-279-P1c Tca-Mir-279-P1d Tca-Mir-279-P2 Tca-Mir-279-P3

Orthologues

Aae-Mir-279-P3 Aga-Mir-279-P3 Agr-Mir-279 Bge-Mir-279-P3 Bpl-Mir-279 Dan-Mir-279-P3 Dlo-Mir-279-P3 Dma-Mir-279-P3 Dme-Mir-279-P3 Dmo-Mir-279-P3 Dpu-Mir-279-P3 Dsi-Mir-279-P3 Dya-Mir-279-P3 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gpa-Mir-279-P3 Gsa-Mir-279 Gsp-Mir-279 Hme-Mir-279-P3 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279

Node of Origin (locus)

T. castaneum

Node of Origin (family)

Protostomia

Genome context
(Tcas5.2)

LG5: 444013-444072 [+] Ensembl

Seed

GACUAGA

Precursor
(pre-Mir +30nt flank)

AGACAAAGCGGUAGUUAUCCUAAAGUUUUUGAUGGGUGAGGGUUUGGUGCAUGUUUUAUUUUAAUCAUGACUAGAUCCACACUCAUCCAAAAAUUUGGUGUCCUCAUCUGGAAAAAUUAC

Get precursor sequence

Structure

        10           20        30        40        50         
AGACAAAGCGGUAGUUAUC---|    G    U        A         G    UUUUA 
                      CUAAA UUUU GAUGGGUG GGGUUUGGU CAUG     U
                      GGUUU AAAA CUACUCAC CCUAGAUCA GUAC     U
CAUUAAAAAGGUCUACUCCUGU^    A    C        A         -    UAAUU 
.       110       100        90        80        70         60