MirGeneDB 3.0
MirGeneDB ID

Bge-Mir-279-P3

Family name MIR-279 (all species)
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-279-o5  Bge-Mir-279-o6  Bge-Mir-279-o7  Bge-Mir-279-P2 
Orthologues Aae-Mir-279-P3  Aga-Mir-279-P3  Agr-Mir-279  Bpl-Mir-279  Dan-Mir-279-P3  Dlo-Mir-279-P3  Dma-Mir-279-P3  Dme-Mir-279-P3  Dmo-Mir-279-P3  Dpu-Mir-279-P3  Dsi-Mir-279-P3  Dya-Mir-279-P3  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P3  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-P3  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-o3  Tca-Mir-279-P3 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(Bger_2.0)		 KZ614992.1: 536335-536392 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P3)		 Mir-279-P3 KZ614992.1: 536335-536392 [-] Ensembl
Mir-279-P2 KZ614992.1: 537892-537951 [-] Ensembl
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
UUGCUUCAUGUGAAACCCUUGGUUUCUGUAGGCGGGUCUGGGUCUGGAUUACGCAAUUUUAAGACGUGACUAGAUCCAUACUCGUCUAUAAUAAUCAGGAAGAUCGGCUUAUGAUUUU
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Structure
        10          20        30        40        50         
UUGCUUCAUGUGAAACC--|      UC           C         A     CAAUU 
                   CUUGGUU  UGUAGGCGGGU UGGGUCUGG UUACG     \
                   GGACUAA  AUAUCUGCUCA ACCUAGAUC AGUGC     U
UUUUAGUAUUCGGCUAGAA^      UA           U         -     AGAAU 
      110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Co Co Di Di Eg Eg Em Em Em Em Em Em Em Em Em Em Ny Ny Ny Ny Ny Ny Ny Ny Ov
Star sequence

Bge-Mir-279-P3_5p*
mirBase accessionNone
Sequence 
0- GGCGGGUCUGGGUCUGGAUUACG -23
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Mature sequence

Bge-Mir-279-P3_3p
mirBase accessionNone
Sequence 
36- UGACUAGAUCCAUACUCGUCUA -58
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