MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-279-P3

Family name MIR-279 (all species)
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-279a
Paralogues Dpu-Mir-279-o8  Dpu-Mir-279-o9  Dpu-Mir-279-P1c  Dpu-Mir-279-P1d  Dpu-Mir-279-P2 
Orthologues Aae-Mir-279-P3  Aga-Mir-279-P3  Agr-Mir-279  Bge-Mir-279-P3  Bpl-Mir-279  Dan-Mir-279-P3  Dlo-Mir-279-P3  Dma-Mir-279-P3  Dme-Mir-279-P3  Dmo-Mir-279-P3  Dsi-Mir-279-P3  Dya-Mir-279-P3  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P3  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-P3  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-o3  Tca-Mir-279-P3 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_43: 177501-177567 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P3)		 Mir-279-P2 DAPPUscaffold_43: 177095-177172 [+] Ensembl
Mir-279-P3 DAPPUscaffold_43: 177501-177567 [+] Ensembl
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
AAUUCCAUGGCGAAGGUUGGGCGCUCUCUAGGUGGGUCUGUUUCUAGUGCAUGUGUUUUCUCAGCGCGUCAUUCAUGACUAGAUCCAUACUCAUCUAAAGGGACCCAGCCAUUCUACAAUUUAAAUU
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Structure
        10           20        30        40        50        60   
AAUUCCAUGGCGAAGGU---|   CG    C         C  UU      G    UGUUUUCUC 
                    UGGG  CUCU UAGGUGGGU UG  UCUAGU CAUG         A
                    ACCC  GGGA AUCUACUCA AC  AGAUCA GUAC         G
UUAAAUUUAACAUCUUACCG^   A-    A         U  CU      -    UUACUGCGC 
     120       110        100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Dpu-Mir-279-P3_5p*
mirBase accessionNone
Sequence 
0- GGUGGGUCUGUUUCUAGUGCAUG -23
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Mature sequence

Dpu-Mir-279-P3_3p
mirBase accessionMIMAT0012654
Sequence 
45- UGACUAGAUCCAUACUCAUCUA -67
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