MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-3-P13b

Family name MIR-3 (all species)
Species Red flour beetle (Tribolium castaneum)
MiRBase ID
Paralogues Tca-Mir-3-P4  Tca-Mir-3-P5  Tca-Mir-3-P6  Tca-Mir-3-P7-v1  Tca-Mir-3-P8  Tca-Mir-3-P9a  Tca-Mir-3-P9b  Tca-Mir-3-P10  Tca-Mir-3-P11  Tca-Mir-3-P12a  Tca-Mir-3-P12b  Tca-Mir-3-P13a 
Orthologues Dlo-Mir-3  Dma-Mir-3  Dpu-Mir-3  Gpa-Mir-3 
Node of Origin (locus) T. castaneum
Node of Origin (family) Pancrustacea
Genome context
(Tcas5.2)		 LG2: 1141776-1141834 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-3-P13b)		 Mir-11619-P5 LG2: 1139937-1139997 [+] Ensembl
Mir-3-P11 LG2: 1140475-1140533 [+] Ensembl
Mir-11618-P6 LG2: 1141029-1141087 [+] Ensembl
Mir-3851-P5a LG2: 1141446-1141505 [+] Ensembl
Mir-3-P13b LG2: 1141776-1141834 [+] Ensembl
Mir-11621-P2a LG2: 1142245-1142303 [+] Ensembl
Mir-11617-P6b LG2: 1142386-1142443 [+] Ensembl
Mir-11618-P4 LG2: 1143177-1143235 [+] Ensembl
Mir-3-P8 LG2: 1143938-1143997 [+] Ensembl
Mir-11619-P4 LG2: 1144051-1144110 [+] Ensembl
Mir-3-P10 LG2: 1144355-1144413 [+] Ensembl
Mir-11618-P5 LG2: 1144897-1144955 [+] Ensembl
Mir-3851-P4a LG2: 1145318-1145377 [+] Ensembl
Mir-3-P13a LG2: 1145669-1145727 [+] Ensembl
Mir-11621-P1 LG2: 1146138-1146196 [+] Ensembl
Mir-11617-P6a LG2: 1146293-1146350 [+] Ensembl
Mir-11618-P1 LG2: 1147094-1147152 [+] Ensembl
Seed CACUGGG
Precursor
(pre-Mir +30nt flank)		 
UUCCAUCACAAUGUUUUCGAAAUUUCUGCCCGGUCUAUCUUUGUUUAGACUGAUAUUUAUUUAAUUAUCACUGGGCAAAGUGGAUCUUGCAGUCGUUUCUCCAGUCCACAUCUUCCGAA
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Structure
        10          20        30        40        50        60
UUCCAUCACAAUGUUUUC--|    UU    CC      U          AC   UAUUUA 
                    GAAAU  CUGC  GGUCUA CUUUGUUUAG  UGA      U
                    CUUUG  GACG  CUAGGU GAAACGGGUC  ACU      U
AAGCCUUCUACACCUGACCU^    CU    UU      -          --   AUUAAU 
       110       100        90         80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-3-P13b_5p*
mirBase accessionNone
Sequence 
0- CGGUCUAUCUUUGUUUAGACUGA -23
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Mature sequence

Tca-Mir-3-P13b_3p
mirBase accessionNone
Sequence 
37- UCACUGGGCAAAGUGGAUCUUG -59
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