MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-3-P9b

Family name MIR-3 (all species)
Species Red flour beetle (Tribolium castaneum)
MiRBase ID
Paralogues Tca-Mir-3-P4  Tca-Mir-3-P5  Tca-Mir-3-P6  Tca-Mir-3-P7-v1  Tca-Mir-3-P8  Tca-Mir-3-P9a  Tca-Mir-3-P10  Tca-Mir-3-P11  Tca-Mir-3-P12a  Tca-Mir-3-P12b  Tca-Mir-3-P13a  Tca-Mir-3-P13b 
Orthologues Dlo-Mir-3  Dma-Mir-3  Dpu-Mir-3  Gpa-Mir-3 
Node of Origin (locus) T. castaneum
Node of Origin (family) Pancrustacea
Genome context
(Tcas5.2)		 KQ971812: 4156-4215 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-3-P9b)		 Mir-3-P9b KQ971812: 4156-4215 [-] Ensembl
Mir-11618-P2 KQ971812: 4386-4443 [-] Ensembl
Mir-3851-P5b KQ971812: 8277-8336 [-] Ensembl
Mir-3851-P7 KQ971812: 13140-13199 [-] Ensembl
Seed CACUGGG
Precursor
(pre-Mir +30nt flank)		 
UAUGCUACACUUUUUUUCGAAAUUCCUGCCAGGUCCACCUUUUGCUUUUGUUGAUAUUUAUUUAACUAUCACUGGGCAAGGUAGACCCUGGAGUGGUUUCUUAAAUCGCCAAUUAAUAUC
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Structure
        10          20        30         40        50        60 
UAUGCUACACUUUUUUUC--|    UC  G     -  C    UU     UU  U    UUUA 
                    GAAAU  CU CCAGG UC ACCU  UGCUU  GU GAUA    U
                    CUUUG  GA GGUCC AG UGGA  ACGGG  CA CUAU    U
CUAUAAUUAACCGCUAAAUU^    GU  -     C  A    --     U-  -    CAAU 
.       110       100         90        80            70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-3-P9b_5p*
mirBase accessionNone
Sequence 
0- AGGUCCACCUUUUGCUUUUGUUGAUA -26
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Mature sequence

Tca-Mir-3-P9b_3p
mirBase accessionNone
Sequence 
38- UCACUGGGCAAGGUAGACCCUG -60
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