Mir-3842

MirGeneDB ID

Tca-Mir-3842

Family name

MIR-3842 (all species)

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-3842

Paralogues

Orthologues

Node of Origin (locus)

T. castaneum

Node of Origin (family)

T. castaneum

Genome context
(Tcas5.2)

LG3: 559294-559352 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-3842)

Mir-3842 LG3: 559294-559352 [+] Ensembl
Mir-71 LG3: 560714-560776 [+] Ensembl
Mir-2-P1-v1 LG3: 560832-560890 [+] Ensembl
Mir-2-P1-v2 LG3: 560833-560889 [+] Ensembl
Mir-2-P2a LG3: 560954-561011 [+] Ensembl
Mir-2-P2b LG3: 561066-561124 [+] Ensembl
Mir-2-P3-v2 LG3: 561198-561260 [+] Ensembl
Mir-2-P3-v1 LG3: 561200-561258 [+] Ensembl
Mir-2-P4-v2 LG3: 561348-561412 [+] Ensembl
Mir-2-P4-v1 LG3: 561350-561410 [+] Ensembl

Seed

GGAGGAA

Precursor
(pre-Mir +30nt flank)

AGCGCCAUCUCGUCCCACAACCUAACAACAAGGAGGAAAAACGAGUCGGUCGGCAUGGCACUGAUGCGAACGCUUCGUUUUUAUCCUUGUUGUUUUAUCGUUGAAAAUGUGGAAAAAAG

Get precursor sequence

Structure

        10        20          30        40        50         
AGCGCCAUCUCGUCCCACAACCU--|          GG         U  G   GCAUGG 
                         AACAACAAGGA  AAAAACGAG CG UCG      C
                         UUGUUGUUCCU  UUUUUGCUU GC AGC      A
GAAAAAAGGUGUAAAAGUUGCUAUU^          A-         C  A   GUAGUC 
       110       100        90         80        70        60