Mir-2-P4-v2

MirGeneDB ID

Tca-Mir-2-P4

Family name

MIR-2 (all species)

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-2-2

Paralogues

Tca-Mir-2-P1-v1 Tca-Mir-2-P2a Tca-Mir-2-P2b Tca-Mir-2-P3-v1 Tca-Mir-2-P4-v1 Tca-Mir-2-P5c Tca-Mir-2-P5d Tca-Mir-2-P5e Tca-Mir-2-P7 Tca-Mir-2-P8

Orthologues

Aae-Mir-2-P4-v1 Aga-Mir-2-P4-v1 Bge-Mir-2-P4-v1 Cbr-Mir-2-o4 Cel-Mir-2-o4 Csc-Mir-2-P4n Csc-Mir-2-P4o Dan-Mir-2-P4a-v1 Dan-Mir-2-P4b-v1 Dma-Mir-2-P4 Dme-Mir-2-P4a-v1 Dme-Mir-2-P4b-v1 Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4b-v1 Dpu-Mir-2-P4 Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4b-v1 Dya-Mir-2-P4a-v1 Dya-Mir-2-P4b-v1 Gpa-Mir-2-P4a-v1 Gpa-Mir-2-P4b-v1 Gsp-Mir-2 Hme-Mir-2-P4 Isc-Mir-2-P4 Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l Ple-Mir-2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(Tcas5.2)

LG3: 561348-561412 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P4-v2)

Mir-3842 LG3: 559294-559352 [+] Ensembl
Mir-71 LG3: 560714-560776 [+] Ensembl
Mir-2-P1-v1 LG3: 560832-560890 [+] Ensembl
Mir-2-P1-v2 LG3: 560833-560889 [+] Ensembl
Mir-2-P2a LG3: 560954-561011 [+] Ensembl
Mir-2-P2b LG3: 561066-561124 [+] Ensembl
Mir-2-P3-v2 LG3: 561198-561260 [+] Ensembl
Mir-2-P3-v1 LG3: 561200-561258 [+] Ensembl
Mir-2-P4-v2 LG3: 561348-561412 [+] Ensembl
Mir-2-P4-v1 LG3: 561350-561410 [+] Ensembl

Variant

Tca-Mir-2-P4-v2

Seed

CACAGCC

Precursor
(pre-Mir +30nt flank)

UUUUUGUACGAUUUUUCAUGGUGUAGGCUUUCGCUCAUCAUCUGGUUGUGAAAUGUGAAUUUAUAUCAUAUCACAGCCAGCUUUGAUGAGCGCAAGAGUGCACUGAUGACGUCAGGUACGAAACU

Get precursor sequence

Structure

        10          20        30        40          50        60 
UUUUUGUACGAUUUUUCAU--      GG   U         U--|         AAUGUGAAU 
                     GGUGUA  CUU CGCUCAUCA   CUGGUUGUGA         \
                     UCACGU  GAA GCGAGUAGU   GACCGACACU         U
UCAAAGCAUGGACUGCAGUAG      GA   C         UUC^         AUACUAUAU 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Star sequence

Tca-Mir-2-P4-v2_5p*

mirBase accession

MIMAT0019096

Sequence

0- UCGCUCAUCAUCUGGUUGUGAAA -23

Get sequence

Mature sequence

Tca-Mir-2-P4-v2_3p

mirBase accession

MIMAT0008353

Sequence

40- UCACAGCCAGCUUUGAUGAGCGCAA -65

Get sequence

Variant

Tca-Mir-2-P4-v1

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

UUUGUACGAUUUUUCAUGGUGUAGGCUUUCGCUCAUCAUCUGGUUGUGAAAUGUGAAUUUAUAUCAUAUCACAGCCAGCUUUGAUGAGCGCAAGAGUGCACUGAUGACGUCAGGUACGAAA

Get precursor sequence

Structure

        10          20        30          40        50         
UUUGUACGAUUUUUCAU--      GG   U         U--|         A   UGAAU 
                   GGUGUA  CUU CGCUCAUCA   CUGGUUGUGA AUG     \
                   UCACGU  GAA GCGAGUAGU   GACCGACACU UAC     U
AAAGCAUGGACUGCAGUAG      GA   C         UUC^         A   UAUAU 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Star sequence

Tca-Mir-2-P4-v1_5p*

mirBase accession

MIMAT0019096

Sequence

0- GCUCAUCAUCUGGUUGUGAAAUG -23

Get sequence

Mature sequence

Tca-Mir-2-P4-v1_3p

mirBase accession

MIMAT0008353

Sequence

36- UAUCACAGCCAGCUUUGAUGAGCGC -61

Get sequence