MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-728-P1

Family name MIR-728 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-728-P2 
Orthologues Dre-Mir-728-P1  Gmo-Mir-728-P1  Loc-Mir-728 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Neopterygii
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 6: 6651213-6651275 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-728-P1)		 Mir-727-P1-v1 6: 6650136-6650202 [+] UCSC Ensembl
Mir-727-P1-v2 6: 6650138-6650200 [+] UCSC Ensembl
Mir-728-P1 6: 6651213-6651275 [+] UCSC Ensembl
Seed AUACUAA
Precursor
(pre-Mir +30nt flank)		 
CCCGCCUGCCUGAUCUGCGGCGCCCUGGAGAAAUGUAGUAGACUUAAAGUAUACGUGUGUGAUCAAAGAGUAUACUAAGUACACUACGUUUAUCCAGGGGGGCUCGCUGCCAGCUGGAGUCCC
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Structure
        10         20         30        40        50        60  
CCCGCCUGCCUGAUCUGC-   G -|     G         AG    AA       GUGUGUG 
                   GGC C CCUGGA AAAUGUAGU  ACUU  AGUAUAC       \
                   UCG G GGACCU UUUGCAUCA  UGAA  UCAUAUG       A
CCCUGAGGUCGACCGUCGC   G G^     A         CA    --       AGAAACU 
 120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Sp Sp Sp To
Star sequence

Tni-Mir-728-P1_5p*
mirBase accessionNone
Sequence 
0- AAAUGUAGUAGACUUAAAGUAUACG -25
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Mature sequence

Tni-Mir-728-P1_3p
mirBase accessionNone
Sequence 
40- UAUACUAAGUACACUACGUUUAU -63
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