MirGeneDB 3.0
MirGeneDB ID

Tur-Mir-5736

Family name MIR-5736 (all species)
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID tur-mir-5736a
Paralogues
Orthologues
Node of Origin (locus) T. urticae
Node of Origin (family) T. urticae
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)		 HE587301.1: 1424674-1424736 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-5736-v1)		 Mir-5733 HE587301.1: 1416967-1417036 [-] Ensembl
Mir-5731-P1c HE587301.1: 1420763-1420850 [-] Ensembl
Mir-5734 HE587301.1: 1423018-1423077 [-] Ensembl
Mir-5736-v2 HE587301.1: 1424673-1424737 [-] Ensembl
Mir-5736-v1 HE587301.1: 1424674-1424736 [-] Ensembl
Variant

Tur-Mir-5736-v1
Seed UUCGCCA
Precursor
(pre-Mir +30nt flank)		 
CCUUAUAAGUCAAUUAAUUUUAAAUACUUUUGCGGAGUAGACUGGUCAAAUGGGUCUUAAACAAUCAAUCAUUUCGCCAAUCUACUGCAAAGAAGUAUUCAAAAAUUGUAGAAAUUUCCUGGC
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Structure
        10          20        30          40        50        60 
CCUUAUAAGUCAAUUAA--    A        --|  GG      C    C      GUCUUAA 
                   UUUU AAUACUUU  UGC  AGUAGA UGGU AAAUGG       \
                   AAAA UUAUGAAG  ACG  UCAUCU ACCG UUUACU       A
CGGUCCUUUAAAGAUGUUA    C        AA^  --      A    C      AACUAAC 
 120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
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Star sequence

Tur-Mir-5736-v1_5p*
mirBase accessionMIMAT0023100
Sequence 
0- UGCGGAGUAGACUGGUCAAAUGG -23
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Mature sequence

Tur-Mir-5736-v1_3p
mirBase accessionMIMAT0023101
Sequence 
41- UUUCGCCAAUCUACUGCAAAGA -63
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Variant

Tur-Mir-5736-v2
Seed UGCGGAG
Precursor
(pre-Mir +30nt flank)		 
UCCUUAUAAGUCAAUUAAUUUUAAAUACUUUUGCGGAGUAGACUGGUCAAAUGGGUCUUAAACAAUCAAUCAUUUCGCCAAUCUACUGCAAAGAAGUAUUCAAAAAUUGUAGAAAUUUCCUGGCU
Get precursor sequence
Structure
        10          20        30          40        50        60  
UCCUUAUAAGUCAAUUAA--    A        --|  GG      C    C     GGUCUUAA 
                    UUUU AAUACUUU  UGC  AGUAGA UGGU AAAUG        \
                    AAAA UUAUGAAG  ACG  UCAUCU ACCG UUUAC        A
UCGGUCCUUUAAAGAUGUUA    C        AA^  --      A    C     UAACUAAC 
   120       110       100        90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
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Mature sequence

Tur-Mir-5736-v2_5p
mirBase accessionMIMAT0023100
Sequence 
0- UUGCGGAGUAGACUGGUCAAAUG -23
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Co-mature sequence

Tur-Mir-5736-v2_3p
mirBase accessionMIMAT0023101
Sequence 
43- UUCGCCAAUCUACUGCAAAGAA -65
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