MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-30-P2b1

Family name MIR-30 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xla-Mir-30-P2b2  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2 
Orthologues Aca-Mir-30-P2b  Ami-Mir-30-P2b  Bta-Mir-30-P2b  Cfa-Mir-30-P2b  Cja-Mir-30-P2b  Cli-Mir-30-P2b  Cmi-Mir-30-P2b  Cpi-Mir-30-P2b  Cpo-Mir-30-P2b  Dno-Mir-30-P2b  Dre-Mir-30-P2b  Eca-Mir-30-P2b  Ete-Mir-30-P2b  Gga-Mir-30-P2b  Gja-Mir-30-P2b  Gmo-Mir-30-P2b  Hsa-Mir-30-P2b  Laf-Mir-30-P2b  Lch-Mir-30-P2b  Loc-Mir-30-P2b  Mal-Mir-30-P2b  Mdo-Mir-30-P2b  Mml-Mir-30-P2b  Mmr-Mir-30-P2b  Mmu-Mir-30-P2b  Mun-Mir-30-P2b  Neu-Mir-30-P2b  Oan-Mir-30-P2b  Ocu-Mir-30-P2b  Pab-Mir-30-P2b  Pbv-Mir-30-P2b  Rno-Mir-30-P2b  Sha-Mir-30-P2b  Spt-Mir-30-P2b  Sto-Mir-30-P2b  Tgu-Mir-30-P2b  Tni-Mir-30-P2b  Xtr-Mir-30-P2b 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NW_016694819.1: 199480-199539 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2b1)		 Mir-30-P2b1 NW_016694819.1: 199480-199539 [-] UCSC Ensembl
Mir-30-P1b1 NW_016694819.1: 209060-209122 [-] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
UGACAUGCUUUCCUUCUGAGAGACAGAUACUGUAAACAUCCUACACUCUCAGCUGUGGAAAUACAAAGCUGGGGGAAGGCUGUUUACUCUCUCUGCCUCUGAAAGCAGCUGAAAGGAAGA
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Structure
        10          20        30        40        50        60
UGACAUGCUUUCCUUCUG--|   A    UACU       U   ACA         GUGGA 
                    AGAG CAGA    GUAAACA CCU   CUCUCAGCU     A
                    UCUC GUCU    CAUUUGU GGA   GGGGGUCGA     A
AGAAGGAAAGUCGACGAAAG^   C    CUCU       C   A--         AACAU 
.       110       100        90        80          70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-30-P2b1_5p
mirBase accessionNone
Sequence 
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Xla-Mir-30-P2b1_3p*
mirBase accessionNone
Sequence 
38- CUGGGGGAAGGCUGUUUACUCU -60
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