Mir-30-P2b

MirGeneDB ID

Gja-Mir-30-P2b

Family name

MIR-30 (all species)

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-30-P1a Gja-Mir-30-P1b Gja-Mir-30-P1d Gja-Mir-30-P2a Gja-Mir-30-P2d

Orthologues

Aca-Mir-30-P2b Ami-Mir-30-P2b Bta-Mir-30-P2b Cfa-Mir-30-P2b Cja-Mir-30-P2b Cli-Mir-30-P2b Cmi-Mir-30-P2b Cpi-Mir-30-P2b Cpo-Mir-30-P2b Dno-Mir-30-P2b Dre-Mir-30-P2b Eca-Mir-30-P2b Ete-Mir-30-P2b Gga-Mir-30-P2b Gmo-Mir-30-P2b Hsa-Mir-30-P2b Laf-Mir-30-P2b Lch-Mir-30-P2b Loc-Mir-30-P2b Mal-Mir-30-P2b Mdo-Mir-30-P2b Mml-Mir-30-P2b Mmr-Mir-30-P2b Mmu-Mir-30-P2b Mun-Mir-30-P2b Neu-Mir-30-P2b Oan-Mir-30-P2b Ocu-Mir-30-P2b Pab-Mir-30-P2b Pbv-Mir-30-P2b Rno-Mir-30-P2b Sha-Mir-30-P2b Spt-Mir-30-P2b Sto-Mir-30-P2b Tgu-Mir-30-P2b Tni-Mir-30-P2b Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xtr-Mir-30-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015172084.1: 149198-149257 [+]

Clustered miRNAs
(< 50kb from Mir-30-P2b)

Mir-30-P1b NW_015172084.1: 125561-125624 [+]
Mir-30-P2b NW_015172084.1: 149198-149257 [+]

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

UGAUCCAGGACAGUGCUAAGUGACAGGUAGUGUAAACAUCCUACACUCUCAGCUGUGGGGAAAAAAAGCUGGGAGAAGGCUGUUUACUCUCUCUGCCUUGGAAAACUGCUGAAGCAGGCA

Get precursor sequence

Structure

        10        20          30        40        50        60
UGAUCCAGGACAGUGCUAAGUGA--|  GU  U       U   ACA         GUGGG 
                         CAG  AG GUAAACA CCU   CUCUCAGCU     G
                         GUC  UC CAUUUGU GGA   GAGGGUCGA     A
ACGGACGAAGUCGUCAAAAGGUUCC^  UC  U       C   A--         AAAAA 
.       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Gja-Mir-30-P2b_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Star sequence

Gja-Mir-30-P2b_3p*

mirBase accession

None

Sequence

38- CUGGGAGAAGGCUGUUUACUCU -60

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