MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-12593-P1a

Family name MIR-12593 (all species)
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-12593-P1b  Ava-Mir-12593-P2a  Ava-Mir-12593-P2b 
Orthologues Bko-Mir-12593  Bpl-Mir-12593  Ple-Mir-12593  Sne-Mir-12593 
Node of Origin (locus) A. vaga
Node of Origin (family) Rotifera
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075494.1: 7795919-7795989 [+] Ensembl
Seed CCACUCU
Precursor
(pre-Mir +30nt flank)		 
UUUGUUUUUUUUAUAAACAUCGUUUCGAUCACCACUCUUGAAGAGAAUCGGACUUGCAAGCAAAAUCGAUUCGAAUAUGUUCAUUCUCUUCUAAGUGGCCCUCGUACGGUGUCAAUCAUCAUUAUCACAAG
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Structure
        10           20        30        40        50        60      
UUUGUUUUUUUUAUAAA---|     UU   UCA     CUU         C    UUGCAAGCAAAA 
                    CAUCGU  CGA   CCACU   GAAGAGAAU GGAC            \
                    GUGGCA  GCU   GGUGA   CUUCUCUUA CUUG            U
GAACACUAUUACUACUAACU^     U-   CCC     AU-         -    UAUAAGCUUAGC 
 .       120       110        100         90         80        70
Deep sequencing
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CommentThe 3' end of the 5p arm may be monouridylated.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To To
Mature sequence

Ava-Mir-12593-P1a_5p
mirBase accessionNone
Sequence 
0- ACCACUCUUGAAGAGAAUCGGAC -23
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Star sequence

Ava-Mir-12593-P1a_3p*
mirBase accessionNone
Sequence 
50- UCAUUCUCUUCUAAGUGGCCC -71
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