MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-12593-P2b

Family name MIR-12593 (all species)
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-12593-P1a  Ava-Mir-12593-P1b  Ava-Mir-12593-P2a 
Orthologues Bko-Mir-12593  Bpl-Mir-12593  Ple-Mir-12593  Sne-Mir-12593 
Node of Origin (locus) A. vaga
Node of Origin (family) Rotifera
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075497.1: 7652874-7652936 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-12593-P2b)		 Mir-12593-P2b CP075497.1: 7652874-7652936 [-] Ensembl
Novel-10-P1 CP075497.1: 7691576-7691633 [-] Ensembl
Seed CAUUCUC
Precursor
(pre-Mir +30nt flank)		 
AACAAACAGUAAGUUUAAACAAAAACGAAAGCAUUAUUCAAAGAGUUUUUGUGAUGGUGAUUAUUAAAUUCACAUUCUCUUUCAAUAGUGCCUUUGUCUAUCUAGACGUGUAUAUAAACUACG
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Structure
        10        20          30        40        50        60  
AACAAACAGUAAGUUUAAACAAAA--|    A        C      UUUU     UGGUGAU 
                          ACGAA GCAUUAUU AAAGAG    UGUGA       \
                          UGUUU CGUGAUAA UUUCUC    ACACU       U
GCAUCAAAUAUAUGUGCAGAUCUAUC^    C        C      UU--     UAAAUUA 
 120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
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Star sequence

Ava-Mir-12593-P2b_5p*
mirBase accessionNone
Sequence 
0- GCAUUAUUCAAAGAGUUUUUGUGA -24
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Mature sequence

Ava-Mir-12593-P2b_3p
mirBase accessionNone
Sequence 
41- ACAUUCUCUUUCAAUAGUGCCU -63
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