MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-2072

Family name MIR-2072 (all species)
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-2072
Paralogues
Orthologues Bla-Mir-2072 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049983.1: 20597094-20597149 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-2072)		 Mir-2072 NC_049983.1: 20597094-20597149 [-] UCSC
Mir-4863 NC_049983.1: 20597426-20597487 [-] UCSC
Seed GCAACAU
Precursor
(pre-Mir +30nt flank)		 
UUUGUUGCCCAGAAGAGGGCCUUGUCUUGCUGCAACAUCACAGUGACCACAUAGGCCAGUCAAUGUGAGCACUGCGAUGUGGUAUUAAGAUCUGGCCAUGCCACACAAUUAAUCAG
Get precursor sequence
Structure
        10          20        30        40        50       
UUUGUUGCCCAGAAGAG--|   UU      C   A     A     AC     AGGC 
                   GGCC  GUCUUG UGC ACAUC CAGUG  CACAU    C
                   CCGG  UAGAAU AUG UGUAG GUCAC  GUGUA    A
GACUAAUUAACACACCGUA^   UC      U   G     C     GA     ACUG 
    110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Bfl-Mir-2072_5p
mirBase accessionMIMAT0010000
Sequence 
0- UGCAACAUCACAGUGACCACAU -22
Get sequence
Star sequence

Bfl-Mir-2072_3p*
mirBase accessionMIMAT0019173
Sequence 
34- GUGAGCACUGCGAUGUGGUAUU -56
Get sequence