MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-4888

Family name MIR-4888 (all species)
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-4888
Paralogues
Orthologues Bla-Mir-4888 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049989.1: 2529761-2529819 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-4888)		 Mir-4888 NC_049989.1: 2529761-2529819 [+] UCSC
Mir-12490 NC_049989.1: 2530565-2530626 [+] UCSC
Seed GCAGAGC
Precursor
(pre-Mir +30nt flank)		 
CUCCACACACAAUGCAUGAGUUGUGUGGGGUGCAGAGCUUGUGCGAUUGGCGCUUGACGACGAAGAGCGCCACACGCGAGCUCUUCAUCCCAACCUUCUCUCUCAGACACCGGCUACUU
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Structure
        10          20        30        40        50          
CUCCACACACAAUGCAU--|  UUGUG       C          CGAU       UGACG 
                   GAG     UGGGGUG AGAGCUUGUG    UGGCGCU     \
                   CUC     ACCCUAC UCUCGAGCGC    ACCGCGA     A
UUCAUCGGCCACAGACUCU^  UUCCA       U          AC--       GAAGC 
       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
To
Mature sequence

Bfl-Mir-4888_5p
mirBase accessionMIMAT0020475
Sequence 
0- UGCAGAGCUUGUGCGAUUGGCGCU -24
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Star sequence

Bfl-Mir-4888_3p*
mirBase accessionNone
Sequence 
37- CGCCACACGCGAGCUCUUCAUC -59
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