Mir-15-P2b

MirGeneDB ID

Cfa-Mir-15-P2b

Family name

MIR-15 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-16-2

Paralogues

Cfa-Mir-15-P1a Cfa-Mir-15-P1b Cfa-Mir-15-P1c Cfa-Mir-15-P1d Cfa-Mir-15-P2a Cfa-Mir-15-P2c Cfa-Mir-15-P2d

Orthologues

Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cin-Mir-15-P2 Cja-Mir-15-P2b Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Eca-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Laf-Mir-15-P2b Lch-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmr-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Neu-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pab-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(canFam3_add)

chr34: 26460807-26460871 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2b)

Mir-15-P1b chr34: 26460663-26460722 [+] UCSC Ensembl
Mir-15-P2b chr34: 26460807-26460871 [+] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

AUUUGGAUGACUGACGUACUUGUUCCGCUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAAAUUAAACACCAAUAUUAUUGUGCUGCUUUAGCGUGACAGGAAUAUAACAGCUAUUUAUUG

Get precursor sequence

Structure

        10          20        30        40        50        60  
AUUUGGAUGACUGACGUA--|    UC    CU         UA        C  AGUGAAAU 
                    CUUGU  CGCU  AGCAGCACG  AAUAUUGG GU        \
                    GGACA  GCGA  UCGUCGUGU  UUAUAACC CA        A
GUUAUUUAUCGACAAUAUAA^    GU    UU         UA        A  AAUUAAAA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-15-P2b_5p

mirBase accession

MIMAT0006648

Sequence

0- UAGCAGCACGUAAAUAUUGGCGU -23

Get sequence

Proposed targets

TargetScanVert: cfa-miR-16
miRDB: MIMAT0006648

Star sequence

Cfa-Mir-15-P2b_3p*

mirBase accession

None

Sequence

42- ACCAAUAUUAUUGUGCUGCUUUA -65

Get sequence