| MirGeneDB ID | Lch-Mir-15-P2b |
|---|---|
| Family name | MIR-15 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-15-P1a Lch-Mir-15-P1b Lch-Mir-15-P1c Lch-Mir-15-P2a Lch-Mir-15-P2c |
| Orthologues | Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cja-Mir-15-P2b Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Eca-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Laf-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmr-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Neu-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pab-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Olfactores |
| Genome context (LatCha1_add) |
JH127319.1: 508022-508085 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-15-P2b) |
Mir-15-P2b
JH127319.1: 508022-508085 [-]
Ensembl
Mir-15-P1b JH127319.1: 508178-508236 [-] Ensembl |
| Seed | AGCAGCA |
| Precursor (pre-Mir +30nt flank) |
AUUGCAGGAUUACUUAUGCCAGCUCCACUCUAGCAGCAUGUAAAUAUUGGUGUAUAAAGAUAGACUAAAACCCCAAUGUUGUUGUGCUGCUUCAGUGUGGCAGGGUUUGGACAACUAAUCGGUAGet precursor sequence |
| Structure | 10 20 30 40 50 60 AUUGCAGGAUUACUUAU- A-| UC CU GUA U AUAAAGA GCC GC CACU AGCAGCAU AAUAUUGG GU U UGG CG GUGA UCGUCGUG UUGUAACC CA A AUGGCUAAUCAACAGGUU GA^ GU CU UUG C AAAUCAG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-15-P2b_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAGCAGCAUGUAAAUAUUGGUGU -23
Get sequence
|
| Star sequence | Lch-Mir-15-P2b_3p* (predicted) |
| mirBase accession | None |
| Sequence |
41- CCCAAUGUUGUUGUGCUGCUUCA -64
Get sequence
|
