| MirGeneDB ID | Lch-Mir-15-P2c |
|---|---|
| Family name | MIR-15 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-15-P1a Lch-Mir-15-P1b Lch-Mir-15-P1c Lch-Mir-15-P2a Lch-Mir-15-P2b |
| Orthologues | Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Olfactores |
| Genome context (LatCha1_add) |
JH126623.1: 2025608-2025670 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-15-P2c) |
Mir-15-P1c
JH126623.1: 2023205-2023262 [+]
Ensembl
Mir-15-P2c JH126623.1: 2025608-2025670 [+] Ensembl |
| Seed | AGCAGCA |
| Precursor (pre-Mir +30nt flank) |
ACUGUUGAAAUGAGUUUGUCAGCAGUACUUUAGCAGCACGUAAAUAUUGGAGUUCAGAAUUGCUGCUAUCUCCAGUAUUGCAAUGCUGCUAUUGUGAGGCUGUCACUGACCUGCGGAAGACUGGet precursor sequence |
| Structure | 10 20 30 40 50 60 ACUGUUGAAAUGAGUUU--|U AG UU CGUA UUCAGAAU G CAGC UAC UAGCAGCA AAUAUUGGAG \ C GUCG GUG AUCGUCGU UUAUGACCUC U GUCAGAAGGCGUCCAGUCA^U GA UU AACG UAUCGUCG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-15-P2c_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAGCAGCACGUAAAUAUUGGAG -22
Get sequence
|
| Star sequence | Lch-Mir-15-P2c_3p* (predicted) |
| mirBase accession | None |
| Sequence |
41- CCAGUAUUGCAAUGCUGCUAUU -63
Get sequence
|
