| MirGeneDB ID | Lch-Mir-15-P1a |
|---|---|
| Family name | MIR-15 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-15-P1b Lch-Mir-15-P1c Lch-Mir-15-P2a Lch-Mir-15-P2b Lch-Mir-15-P2c |
| Orthologues | Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cja-Mir-15-P1a Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Eca-Mir-15-P1a Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Laf-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmr-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Neu-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Pab-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xtr-Mir-15-P1a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Olfactores |
| Genome context (LatCha1_add) |
JH127182.1: 914023-914083 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-15-P1a) |
Mir-15-P2a
JH127182.1: 910222-910287 [-]
Ensembl
Mir-15-P1a JH127182.1: 914023-914083 [-] Ensembl |
| Seed | AGCAGCA |
| Precursor (pre-Mir +30nt flank) |
GCACCUUUUGAAAGAUACCUUGGAGCACUGUAGCAGCACAUAAUGGUUUGUGAGUUAUAUAGAAUUAUGCAGGCCAUGUUGUGCUGCUGCAAAAAUACAAGGAUUUAAUCUACUCUGAAAAGet precursor sequence |
| Structure | 10 20 30 40 50 GCACCUUUUGAAAGAUA--| GAGCAC UA GAGUUAUA CCUUG UGUAGCAGCACA AUGGUUUGU \ GGAAC ACGUCGUCGUGU UACCGGACG U AAAAGUCUCAUCUAAUUUA^ AUAAAA UG UAUUAAGA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Lch-Mir-15-P1a_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAGCAGCACAUAAUGGUUUGUG -22
Get sequence
|
| Star sequence | Lch-Mir-15-P1a_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- CAGGCCAUGUUGUGCUGCUGCA -61
Get sequence
|
