Mir-15-P1a

MirGeneDB ID

Loc-Mir-15-P1a

Family name

Species

MiRBase ID

Paralogues

Loc-Mir-15-P1b Loc-Mir-15-P1c Loc-Mir-15-P1c-as Loc-Mir-15-P1d Loc-Mir-15-P2a Loc-Mir-15-P2b Loc-Mir-15-P2c Loc-Mir-15-P2d

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cja-Mir-15-P1a Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Eca-Mir-15-P1a Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Laf-Mir-15-P1a Lch-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmr-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Neu-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Pab-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xtr-Mir-15-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(LepOcu1)

LG17: 24936841-24936899 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1a)

Mir-15-P2a LG17: 24936650-24936714 [-] Ensembl
Mir-15-P1a LG17: 24936841-24936899 [-] Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

UGAAGGCUUGUUAAAAACCUUGCUGUGUUGUAGCAGCACAUAAUGGUUUGUUGGUUGUACGGAGAUGCAAGCCAUACUGUGCUGCUGCAAAAACACAAGGAUCUGAGCUCCAGCCAUAC

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Structure

        10          20         30        40        50         
UGAAGGCUUGUUAAAAA--|    C   G-             UA         UGGUUGU 
                   CCUUG UGU  UUGUAGCAGCACA  AUGGUUUGU       \
                   GGAAC ACA  AACGUCGUCGUGU  UACCGAACG       A
CAUACCGACCUCGAGUCUA^    -   AA             CA         UAGAGGC 
       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-15-P1a_5p

mirBase accession

None

Sequence

0- UAGCAGCACAUAAUGGUUUGUU -22

Get sequence

Star sequence

Loc-Mir-15-P1a_3p*

mirBase accession

None

Sequence

37- CAAGCCAUACUGUGCUGCUGCA -59

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