MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-15-P1d

Family name MIR-15 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-15-P1a  Loc-Mir-15-P1b  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Loc-Mir-15-P2a  Loc-Mir-15-P2b  Loc-Mir-15-P2c  Loc-Mir-15-P2d 
Orthologues Ami-Mir-15-P1d  Bta-Mir-15-P1d  Cfa-Mir-15-P1d  Cin-Mir-15-P1  Cja-Mir-15-P1d  Cpo-Mir-15-P1d  Dno-Mir-15-P1d  Dre-Mir-15-P1d  Eca-Mir-15-P1d  Ete-Mir-15-P1d  Hsa-Mir-15-P1d  Laf-Mir-15-P1d  Mdo-Mir-15-P1d  Mml-Mir-15-P1d  Mmr-Mir-15-P1d  Mmu-Mir-15-P1d  Neu-Mir-15-P1d  Oan-Mir-15-P1d  Ocu-Mir-15-P1d  Pab-Mir-15-P1d  Rno-Mir-15-P1d  Sha-Mir-15-P1d  Sto-Mir-15-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LepOcu1)		 LG2: 61580797-61580857 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1d)		 Mir-15-P1d LG2: 61580797-61580857 [+] Ensembl
Mir-15-P2d LG2: 61581861-61581925 [+] Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
CAGCUCCCUCCCUGGCUCCUGCGCGCCCUAUAGCAGCACAUCAUGGUUUGCAGGCUCCCAGUACAGGUCCAAACCAUUAUGUGCUGUUACUGGGAGCACUGGGACAUCCACCAUCCAGCAG
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Structure
        10         20         30        40        50          
CAGCUCCCUCCCUGGCU-   GC-| G   UA           C        CAGGCUCCC 
                  CCU   GC CCC  UAGCAGCACAU AUGGUUUG         \
                  GGG   CG GGG  AUUGUCGUGUA UACCAAAC         A
GACGACCUACCACCUACA   UCA^ A   UC           U        CUGGACAUG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-15-P1d_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACAUCAUGGUUUGCA -22
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Co-mature sequence

Loc-Mir-15-P1d_3p
mirBase accessionNone
Sequence 
39- CAAACCAUUAUGUGCUGUUACU -61
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