Mir-15-P1d

MirGeneDB ID

Mdo-Mir-15-P1d

Family name

MIR-15 (all species)

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-497

Paralogues

Mdo-Mir-15-P1a Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P2a Mdo-Mir-15-P2b Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2d

Orthologues

Ami-Mir-15-P1d Bta-Mir-15-P1d Cfa-Mir-15-P1d Cin-Mir-15-P1 Cja-Mir-15-P1d Cpo-Mir-15-P1d Dno-Mir-15-P1d Dre-Mir-15-P1d Eca-Mir-15-P1d Ete-Mir-15-P1d Hsa-Mir-15-P1d Laf-Mir-15-P1d Loc-Mir-15-P1d Mml-Mir-15-P1d Mmr-Mir-15-P1d Mmu-Mir-15-P1d Neu-Mir-15-P1d Oan-Mir-15-P1d Ocu-Mir-15-P1d Pab-Mir-15-P1d Rno-Mir-15-P1d Sha-Mir-15-P1d Sto-Mir-15-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(monDom5_add)

2: 255707676-255707737 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1d)

Mir-15-P1d 2: 255707676-255707737 [+] UCSC Ensembl
Mir-15-P2d 2: 255708041-255708102 [+] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

UCCUAUCCAAAUCCCAUCCUGCCUCCGCCCCAGCAGCACACUGUGGUUUGUUCAGUGUUAUGGCCAAGUCCAAACCACACUGUGGUGUUAGAGCGAGGGUAGGGGAGGCACCGCCAUCGCCA

Get precursor sequence

Structure

        10          20        30        40        50        60
UCCUAUCCAAAUCCCAU--|     UC   CCC    G    C         UUCAGUGUU 
                   CCUGCC  CGC   AGCA CACA UGUGGUUUG         A
                   GGAUGG  GCG   UUGU GUGU ACACCAAAC         U
ACCGCUACCGCCACGGAGG^     GA   AGA    G    C         CUGAACCGG 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut +1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-15-P1d_5p

mirBase accession

MIMAT0012762

Sequence

0- CAGCAGCACACUGUGGUUUGUU -22

Get sequence

Proposed targets

TargetScanVert: mdo-miR-497-5p

Star sequence

Mdo-Mir-15-P1d_3p*

mirBase accession

MIMAT0026946

Sequence

40- CAAACCACACUGUGGUGUUAGA -62

Get sequence

Proposed targets

TargetScanVert: mdo-miR-497-3p