MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-15-P1c-as

Family name MIR-15 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-15-P1a  Loc-Mir-15-P1b  Loc-Mir-15-P1c  Loc-Mir-15-P1d  Loc-Mir-15-P2a  Loc-Mir-15-P2b  Loc-Mir-15-P2c  Loc-Mir-15-P2d 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cja-Mir-15-P1c  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Eca-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Laf-Mir-15-P1c  Lch-Mir-15-P1c  Mdo-Mir-15-P1c-v1  Mml-Mir-15-P1c  Mmr-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mun-Mir-15-P1c  Neu-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pab-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) L. oculatus
Node of Origin (family) Olfactores
Genome context
(LepOcu1)		 LG7: 45848215-45848272 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1c-as)		 Mir-15-P2c LG7: 45848046-45848108 [-] Ensembl
Mir-15-P1c LG7: 45848213-45848270 [-] Ensembl
Mir-15-P1c-as LG7: 45848215-45848272 [+] Ensembl
Seed AAACCAU
Precursor
(pre-Mir +30nt flank)		 
CUCGCUCGCUCGCUCGUGCUUGCGCCGCAGAGGCAGCUCCGCAUGGUCUGUAUCUCCUCGUCACUACAAACCAUGUAGUGCUGCUACAGCCGCUGCAAGCCCACCAUCCCCGCCAGGU
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Structure
        10         20         30        40        50        
CUCGCUCGCUCGCUCGU-      -| C  AGA      UCC       C    UCUCC 
                  GCUUGC GC GC   GGCAGC   GCAUGGU UGUA     U
                  CGAACG CG CG   UCGUCG   UGUACCA ACAU     C
UGGACCGCCCCUACCACC      U^ C  ACA      UGA       A    CACUG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-15-P1c-as_5p*
mirBase accessionNone
Sequence 
0- AGGCAGCUCCGCAUGGUCUGUA -22
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Mature sequence

Loc-Mir-15-P1c-as_3p
mirBase accessionNone
Sequence 
36- CAAACCAUGUAGUGCUGCUACA -58
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