MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-15-P1c

Family name MIR-15 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-15-P1a  Cmi-Mir-15-P1b  Cmi-Mir-15-P2a  Cmi-Mir-15-P2b  Cmi-Mir-15-P2c 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cja-Mir-15-P1c  Cli-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Eca-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Laf-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mml-Mir-15-P1c  Mmr-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mun-Mir-15-P1c  Neu-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pab-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635856.1: 9695363-9695423 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1c)		 Mir-15-P2c KI635856.1: 9695185-9695246 [-] UCSC Ensembl
Mir-15-P1c KI635856.1: 9695363-9695423 [-] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
ACACAAAAAAAGUCUCGCUUGGAGGUGAUGUAGCAGCACAUCAUGGUUUGUAGGUAUACUGGAAGAUAACAGACCAUACUGAGCUGCCGCAUGACUGCUAAAGGUGUUCAAGCCGACCCAG
Get precursor sequence
Structure
        10          20        30        40        50          
ACACAAAAAAAGUCUCGC--|   A   G   UA     A  UC         AGGUAUAC 
                    UUGG GGU AUG  GCAGC CA  AUGGUUUGU        \
                    AAUC UCA UAC  CGUCG GU  UACCAGACA        U
GACCCAGCCGAACUUGUGGA^   G   G   GC     A  CA         AUAGAAGG 
 .       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-15-P1c_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACAUCAUGGUUUGUAG -23
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Star sequence

Cmi-Mir-15-P1c_3p*
mirBase accessionNone
Sequence 
38- ACAGACCAUACUGAGCUGCCGCA -61
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