Mir-15-P1c

MirGeneDB ID

Bta-Mir-15-P1c

Family name

MIR-15 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-424

Paralogues

Bta-Mir-15-P1a Bta-Mir-15-P1b Bta-Mir-15-P1d Bta-Mir-15-P2a Bta-Mir-15-P2b Bta-Mir-15-P2c Bta-Mir-15-P2d

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 18242762-18242820 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1c)

Mir-450-P3 NC_037357.1: 18236226-18236283 [-] UCSC Ensembl
Mir-450-P2 NC_037357.1: 18236396-18236452 [-] UCSC Ensembl
Mir-450-P1 NC_037357.1: 18236541-18236597 [-] UCSC Ensembl
Mir-542 NC_037357.1: 18237457-18237515 [-] UCSC Ensembl
Mir-15-P2c NC_037357.1: 18242411-18242473 [-] UCSC Ensembl
Mir-15-P1c NC_037357.1: 18242762-18242820 [-] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

CGAUCCUCCUUCGUUGACUCCGAGGGGAUGCAGCAGCAAUUCAUGUUUUGAAGUGCUUUAAACGGUUCAAAACGUGAGGCGCUGCUAUACCCCCUUGCGAGGAAGUAGGAAGGUGGGGU

Get precursor sequence

Structure

        10         20         30        40        50         
CGAUCCUCCUUCGUUGA-   -|      A  C      AA             GUGCUU 
                  CUC CGAGGGG UG AGCAGC  UUCAUGUUUUGAA      \
                  GAG GUUCCCC AU UCGUCG  GAGUGCAAAACUU      U
UGGGGUGGAAGGAUGAAG   C^      C  A      CG             GGCAAA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-15-P1c_5p

mirBase accession

MIMAT0013593

Sequence

0- CAGCAGCAAUUCAUGUUUUGAA -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-424-5p

Star sequence

Bta-Mir-15-P1c_3p*

mirBase accession

MIMAT0015304

Sequence

37- CAAAACGUGAGGCGCUGCUAUA -59

Get sequence

Proposed targets

TargetScanVert: bta-miR-424-3p