MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-15-P2c

Family name MIR-15 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-15-P1a  Loc-Mir-15-P1b  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Loc-Mir-15-P1d  Loc-Mir-15-P2a  Loc-Mir-15-P2b  Loc-Mir-15-P2d 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cja-Mir-15-P2c  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Eca-Mir-15-P2c  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Laf-Mir-15-P2c  Lch-Mir-15-P2c  Mdo-Mir-15-P2c-v1  Mml-Mir-15-P2c  Mmr-Mir-15-P2c  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Neu-Mir-15-P2c-v1  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pab-Mir-15-P2c  Pbv-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LepOcu1)		 LG7: 45848046-45848108 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2c)		 Mir-15-P2c LG7: 45848046-45848108 [-] Ensembl
Mir-15-P1c LG7: 45848213-45848270 [-] Ensembl
Mir-15-P1c-as LG7: 45848215-45848272 [+] Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
CCGCAGUCCCGCGCGUCGCUGGCCGUGCUGUAGCAGCACGUACAUACUGGAGUGGCGCCGAUUGGGGUCUCCAGUGUUGGCGGAUCUGCUUCAGUAAGGCCAGCGCGGACCAUGGACCUGGAU
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Structure
        10          20        30         40        50        60
CCGCAGUCCCGCGCGUC--       G     U     CA-|  AC         UGGCGCC 
                   GCUGGCC UGCUG AGCAG   CGU  AUACUGGAG       G
                   CGACCGG AUGAC UCGUC   GCG  UGUGACCUC       A
UAGGUCCAGGUACCAGGCG       A     U     UAG^  GU         UGGGGUU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-15-P2c_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACGUACAUACUGGAG -22
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Star sequence

Loc-Mir-15-P2c_3p*
mirBase accessionNone
Sequence 
40- CCAGUGUUGGCGGAUCUGCUUCA -63
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