MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-15-P2c

Family name MIR-15 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-16c
Paralogues Gga-Mir-15-P1a  Gga-Mir-15-P1b  Gga-Mir-15-P1c  Gga-Mir-15-P2a  Gga-Mir-15-P2b 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cja-Mir-15-P2c  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Eca-Mir-15-P2c  Ete-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Laf-Mir-15-P2c  Lch-Mir-15-P2c  Loc-Mir-15-P2c  Mdo-Mir-15-P2c-v1  Mml-Mir-15-P2c  Mmr-Mir-15-P2c  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Neu-Mir-15-P2c-v1  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pab-Mir-15-P2c  Pbv-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(Gallus_gallus.GRCg6a)		 4: 4044236-4044300 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2c)		 Mir-15-P2c 4: 4044236-4044300 [-] UCSC Ensembl
Mir-15-P1c 4: 4044608-4044665 [-] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
CACGGGGCUGGAGAGCUGUCAGCAGUGCUCUAGCAGCACGUAAAUACUGGAGUGGGGGAUCGCCUGUUGCUCUCCAGUAUUGCAUUGCUGCUUUAGUGAGGCUGGAAAUCAGUCCCUGGCACCUG
Get precursor sequence
Structure
        10          20        30        40        50        60  
CACGGGGCUGGAGAGCUG--|    AG    CU       CGUA          UGGGGGAUC 
                    UCAGC  UGCU  AGCAGCA    AAUACUGGAG         \
                    GGUCG  GUGA  UCGUCGU    UUAUGACCUC         G
GUCCACGGUCCCUGACUAAA^    GA    UU       UACG          UCGUUGUCC 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-15-P2c_5p
mirBase accessionMIMAT0007739
Sequence 
0- UAGCAGCACGUAAAUACUGGAG -22
Get sequence
Proposed targets TargetScanVert: gga-miR-16c-5p
miRDB: MIMAT0007739
Star sequence

Gga-Mir-15-P2c_3p*
mirBase accessionMIMAT0026786
Sequence 
43- CCAGUAUUGCAUUGCUGCUUUA -65
Get sequence
Proposed targets TargetScanVert: gga-miR-16c-3p
miRDB: MIMAT0026786