Mir-15-P1a2

MirGeneDB ID

Mal-Mir-15-P1a2

Family name

MIR-15 (all species)

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-15-P1b Mal-Mir-15-P2a2 Mal-Mir-15-P2b Mal-Mir-15-P2d

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cja-Mir-15-P1a Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a2 Eca-Mir-15-P1a Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Laf-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmr-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Neu-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Pab-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xtr-Mir-15-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884787.1: 2302995-2303053 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1a2)

Mir-15-P1a2 KV884787.1: 2302995-2303053 [+] UCSC Ensembl
Mir-15-P2a2 KV884787.1: 2303226-2303289 [+] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

GGGACGGUGACUUUAUUUCUGGUGAUGCUGUAGCAGCACGGAAUGGUUUGUGGGUUACACUGAGAUACAGGCCAUACUGUGCUGCUGCAUUAAAACCUGAAUACACAUCCUGUUCUUCG

Get precursor sequence

Structure

        10          20        30        40        50         
GGGACGGUGACUUUAUU--| U   GA  C             A          GGUUAC 
                   UC GGU  UG UGUAGCAGCACGG AUGGUUUGUG      \
                   AG CCA  AU ACGUCGUCGUGUC UACCGGACAU      A
GCUUCUUGUCCUACACAUA^ U   AA  U             A          AGAGUC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-15-P1a2_5p

mirBase accession

None

Sequence

0- UAGCAGCACGGAAUGGUUUGUG -22

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Star sequence

Mal-Mir-15-P1a2_3p*

mirBase accession

None

Sequence

37- CAGGCCAUACUGUGCUGCUGCA -59

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