Mir-15-P1a

MirGeneDB ID

Mmu-Mir-15-P1a

Family name

MIR-15 (all species)

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-15a

Paralogues

Mmu-Mir-15-P1b Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1d Mmu-Mir-15-P2a Mmu-Mir-15-P2b Mmu-Mir-15-P2c Mmu-Mir-15-P2d

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cja-Mir-15-P1a Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Eca-Mir-15-P1a Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Laf-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmr-Mir-15-P1a Mun-Mir-15-P1a Neu-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Pab-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xtr-Mir-15-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(mm10)

chr14: 61632038-61632096 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1a)

Mir-15-P2a chr14: 61631893-61631957 [-] UCSC Ensembl
Mir-15-P1a chr14: 61632038-61632096 [-] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

GAGUUUUCAAAACCAACCCUUGGAGUAAAGUAGCAGCACAUAAUGGUUUGUGGAUGUUGAAAAGGUGCAGGCCAUACUGUGCUGCCUCAAAAUACAAGGACCUGAUCUUCUGAAGAGAG

Get precursor sequence

Structure

        10           20        30        40        50         
GAGUUUUCAAAACCAAC---|    GAGUAAAGUA        UA         GGAUGUU 
                    CCUUG          GCAGCACA  AUGGUUUGU       \
                    GGAAC          CGUCGUGU  UACCGGACG       G
GAGAGAAGUCUUCUAGUCCA^    AUAAAACUC-        CA         UGGAAAA 
       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-15-P1a_5p

mirBase accession

MIMAT0000526

Sequence

0- UAGCAGCACAUAAUGGUUUGUG -22

Get sequence

Proposed targets

microrna.org: MIMAT0000526
TargetScanVert: mmu-miR-15a-5p
miRDB: MIMAT0000526

Star sequence

Mmu-Mir-15-P1a_3p*

mirBase accession

MIMAT0004624

Sequence

37- CAGGCCAUACUGUGCUGCCUCA -59

Get sequence

Proposed targets

microrna.org: MIMAT0004624
TargetScanVert: mmu-miR-15a-3p
miRDB: MIMAT0004624