MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-15-P1a2

Family name MIR-15 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-15a
Paralogues Gmo-Mir-15-P1b  Gmo-Mir-15-P2a2  Gmo-Mir-15-P2b 
Orthologues Ami-Mir-15-P1a  Bta-Mir-15-P1a  Cfa-Mir-15-P1a  Cin-Mir-15-P1  Cja-Mir-15-P1a  Cli-Mir-15-P1a  Cmi-Mir-15-P1a  Cpi-Mir-15-P1a  Cpo-Mir-15-P1a  Dno-Mir-15-P1a  Dre-Mir-15-P1a2  Eca-Mir-15-P1a  Ete-Mir-15-P1a  Gga-Mir-15-P1a  Gja-Mir-15-P1a  Hsa-Mir-15-P1a  Laf-Mir-15-P1a  Lch-Mir-15-P1a  Loc-Mir-15-P1a  Mal-Mir-15-P1a2  Mdo-Mir-15-P1a  Mml-Mir-15-P1a  Mmr-Mir-15-P1a  Mmu-Mir-15-P1a  Mun-Mir-15-P1a  Neu-Mir-15-P1a  Oan-Mir-15-P1a  Ocu-Mir-15-P1a  Pab-Mir-15-P1a  Rno-Mir-15-P1a  Sha-Mir-15-P1a  Spt-Mir-15-P1a  Sto-Mir-15-P1a  Tgu-Mir-15-P1a  Tni-Mir-15-P1a2  Xtr-Mir-15-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_413: 520593-520650 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1a2)		 Mir-15-P1a2 GeneScaffold_413: 520593-520650 [+] UCSC Ensembl
Mir-15-P2a2 GeneScaffold_413: 520865-520930 [+] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
AAGGGAAGCCCAUCAUUUCUGGCAGUAUUGUAGCAGCACAGAAUGGUUUGUGGUUACACUGAGAUACAGGCCGUACUGUGCUGCAGCAGUAAAGCCGGAACAAAGUGCAUCACGGCAA
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Structure
        10          20        30        40        50        
AAGGGAAGCCCAUCAUU--|     AG      A         A          GUUAC 
                   UCUGGC  UAUUGU GCAGCACAG AUGGUUUGUG     A
                   AGGCCG  AUGACG CGUCGUGUC UGCCGGACAU     C
AACGGCACUACGUGAAACA^     AA      A         A          AGAGU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-15-P1a2_5p
mirBase accessionMIMAT0044267
Sequence 
0- UAGCAGCACAGAAUGGUUUGUG -22
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Star sequence

Gmo-Mir-15-P1a2_3p*
mirBase accessionNone
Sequence 
36- CAGGCCGUACUGUGCUGCAGCA -58
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