| MirGeneDB ID | Lch-Mir-15-P2a |
|---|---|
| Family name | MIR-15 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-15-P1a Lch-Mir-15-P1b Lch-Mir-15-P1c Lch-Mir-15-P2b Lch-Mir-15-P2c |
| Orthologues | Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xtr-Mir-15-P2a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Olfactores |
| Genome context (LatCha1_add) |
JH127182.1: 910222-910287 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-15-P2a) |
Mir-15-P2a
JH127182.1: 910222-910287 [-]
Ensembl
Mir-15-P1a JH127182.1: 914023-914083 [-] Ensembl |
| Seed | AGCAGCA |
| Precursor (pre-Mir +30nt flank) |
AUCUGACAGAUGCUAAAGCCAGUGGUACCUUAGCAGCACGUAAAAUACUAGAGUUUAGUGUUUAUGAAUGCCUCCAGUAUUGGUCGUGCUGCUGAAGUAAGGCUGACACCUUUCUACGAAUGGUGGGet precursor sequence |
| Structure | 10 20 30 40 50 60 AUCUGACAGAUGCUAAAGC--| GG C UAA A GUUUAGUGU CAGU UAC UUAGCAGCACG AAUACU GA U GUCG AUG AGUCGUCGUGC UUAUGA CU U GGUGGUAAGCAUCUUUCCACA^ GA A UGG C CCGUAAGUA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-15-P2a_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAGCAGCACGUAAAAUACUAGA -22
Get sequence
|
| Star sequence | Lch-Mir-15-P2a_3p* (predicted) |
| mirBase accession | None |
| Sequence |
43- CCAGUAUUGGUCGUGCUGCUGAA -66
Get sequence
|
