MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-431

Family name MIR-431 (all species)
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-431
Paralogues
Orthologues Bta-Mir-431  Cfa-Mir-431  Cja-Mir-431  Eca-Mir-431  Ete-Mir-431  Hsa-Mir-431  Laf-Mir-431  Mml-Mir-431  Mmr-Mir-431  Mmu-Mir-431  Ocu-Mir-431  Pab-Mir-431  Rno-Mir-431 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_111: 951653-951716 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-431)		 Mir-493 scaffold_111: 942145-942206 [+] UCSC
Mir-337-v1 scaffold_111: 946840-946900 [+] UCSC
Mir-337-v2 scaffold_111: 946840-946900 [+] UCSC
Mir-431 scaffold_111: 951653-951716 [+] UCSC
Mir-12073 scaffold_111: 952329-952402 [+] UCSC
Mir-433 scaffold_111: 952524-952597 [+] UCSC
Mir-127 scaffold_111: 953628-953683 [+] UCSC
Mir-432 scaffold_111: 955129-955197 [+] UCSC
Mir-136-v2 scaffold_111: 955349-955404 [+] UCSC
Mir-136-v1 scaffold_111: 955349-955404 [+] UCSC
Mir-370 scaffold_111: 977812-977869 [+] UCSC
Seed GUCUUGC
Precursor
(pre-Mir +30nt flank)		 
GCACGUCGUUGUCCUGCGCGUCCUGCGAGGUGUCUUGCAGGCCGUCAUGCAGGCCACACUGACGGUAACGUUGCAGGUCGUCUUGCAGGGCUUCUCGCAAGACGACAUCCUCAUCGCCAACGAC
Get precursor sequence
Structure
        10          20        30        40        50        60 
GCACGUCGUUGUCCUGCG--|   C       U          C  UCA    GGCCACACU 
                    CGUC UGCGAGG GUCUUGCAGG CG   UGCA         G
                    GCAG ACGCUCU CGGGACGUUC GC   ACGU         A
CAGCAACCGCUACUCCUACA^   A       U          U  UGG    UGCAAUGGC 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere are Dicer cuts +2 and +3 on both arms.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-431_5p
mirBase accessionMIMAT0047249
Sequence 
0- UGUCUUGCAGGCCGUCAUGCA -21
Get sequence
Co-mature sequence

Cpo-Mir-431_3p
mirBase accessionMIMAT0047250
Sequence 
43- CAGGUCGUCUUGCAGGGCUUC -64
Get sequence