| MirGeneDB ID | Eca-Mir-1271 |
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| Family name |
MIR-1271 (all species) |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bta-Mir-1271
Cfa-Mir-1271
Cpo-Mir-1271
Dno-Mir-1271
Ete-Mir-1271
Hsa-Mir-1271
Laf-Mir-1271
Mml-Mir-1271
Mmu-Mir-1271
Pab-Mir-1271
Rno-Mir-1271
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009161.1: 4978545-4978602 [-]
UCSC
Ensembl
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| Seed |
UUGGCAC |
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Precursor
(pre-Mir +30nt flank) |
GCCUCUGUAUCCCCAGCACCCAGGUCAGCGCUUGGCACCUCGUAAGCACUCAGUAAAUACUUGUUGAGUGCCUGCUGUGUGCCAGGCAUUGUGCUGAGGGCUUUGGGGGGAUCCAGAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GCCUCUGUAUCCCCAGCA AGG -----| CUC A GUAAA
CCC UCAGC GCUUGGCAC GUA GCACUCA U
GGG AGUCG CGGACCGUG CGU CGUGAGU A
GAGACCUAGGGGGGUUUC --- UGUUA^ UGU C UGUUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Mature sequence |
Eca-Mir-1271_5p |
| mirBase accession | None |
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| Sequence |
0- CUUGGCACCUCGUAAGCACUCA -22
Get sequence
|
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| Star sequence |
Eca-Mir-1271_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- AGUGCCUGCUGUGUGCCAGGCA -58
Get sequence
|
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